Pairwise Alignments

Query, 1048 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1029 a.a., multidrug efflux RND transporter permease subunit MdtC from Dickeya dianthicola ME23

 Score =  478 bits (1229), Expect = e-138
 Identities = 314/1030 (30%), Positives = 531/1030 (51%), Gaps = 37/1030 (3%)

Query: 8    VNHPVFATMMMVALLVMGAFSLQRLGLDQYPNVDVPVVVVVTSYPGATPETVEMEVTRPV 67
            ++ PV  T++ +A+ + G    Q L +   P VD PV+ V  + PGA+PET+   V  P+
Sbjct: 8    IHRPVATTLLALAIALCGLIGYQLLPVSPLPQVDYPVISVTATLPGASPETMASSVATPL 67

Query: 68   EDALNAIGGLDEVTSTSYEGRSVVVAKFKLEVQSSAAAQEVRDKIAAIEANFPEDT-KKP 126
            E +L  I G++E+TSTS  G + ++ +F L+   + AA++V+  I A ++  P     +P
Sbjct: 68   ERSLGRIAGVNEMTSTSSLGNTRIILQFALDRDINGAARDVQAAINAAQSLLPSSMPSRP 127

Query: 127  VISRFDPAAEPILSLAISSTSLDVPALATLAEQKVVRQLTTVAGIGQATLVGGRKRQIDV 186
               + +P+  PI+ + ++S +     L   A  ++ ++++ + G+G  T+ G     + V
Sbjct: 128  YYRKVNPSDAPIMIITLTSDTYGPGQLYDYASTQIAQRVSQIDGVGDVTIGGSSLPAVRV 187

Query: 187  TIDETRMRALGIGVNEVVTALRAGNSNSPAGSVVDPVSERTIQIQSRIEEPEALLDMVVA 246
             ++   +   G+ ++ V  ++   N   P GSV    +   IQ    ++  +A   ++V 
Sbjct: 188  ALNPQALFNQGVSLDAVRQSIAQSNVRQPLGSVDSGSTHYQIQTNDELKTADAYRSLIVH 247

Query: 247  RRGGVAILLRDVATLSEGAADAENRAIYNGQTALAIDIVKVQDANTVQVVSDVRKRLDAL 306
               G  + L DVAT+ +   +  N  + N + A+ + I +  DAN +  V  +R  +  L
Sbjct: 248  YNNGAPVRLSDVATVKDSVQNVLNAGMTNAKPAVLVMIRRAPDANIISTVDAIRASMPEL 307

Query: 307  NAELSPQNIQLRIVTDSSIPIQESVTQVQTTLIEGAALAVAIVFLFLNSWRSTVITGLTL 366
             A L P +I L +  D S  I+ S+  V+ +L    +L + +VFLFL S R+T+I  + +
Sbjct: 308  QA-LLPASITLNVAQDRSPTIRASLRDVERSLTIAVSLVILVVFLFLRSGRATLIPAIAV 366

Query: 367  PIAIIGTLTVVDFLGFTLNTLSLLALTLSIGILVDDAIVVRENITRHLHMGKSHLRAALD 426
            P+++IGT + +   GF+LN LSL+ALT++ G +VDDAIVV ENI+RH+  G   L+A+L 
Sbjct: 367  PVSLIGTFSAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENISRHIEAGMKPLQASLQ 426

Query: 427  GTGEIGLAVIATTATIVAVFLPVAFMDGIVGRFFYQFGVTVSAAVLISLFVAFTLDPMLS 486
            G  E+G  V++ + +++AVF+P+ FMDG+ GR F +F +T+S A+LISL V+ TL PM+ 
Sbjct: 427  GVREVGFTVVSMSLSLIAVFIPLLFMDGLPGRLFREFSITLSVAILISLLVSITLTPMMC 486

Query: 487  S---VWYDPDAQADAKRGPIGRLIARFDHGFEWMAGQYRHAIDWTLRHR---LVTLLVTA 540
            +     + P +Q   +     RL+     G       Y  ++ W L H    ++ LL T 
Sbjct: 487  ARLLRLHTPRSQPRTR--GFNRLLLGLQQG-------YGRSLRWVLNHSRWVMMVLLCTI 537

Query: 541  GIFIGSLFMVPLVGTEFVPDADEGRFQINLTAPVGSSLDYTTAKLQQVKKALREFPEVEM 600
            G+ +     +P     F P+ D GR    + A    S      KLQ     +R  P V+ 
Sbjct: 538  GLSVWLYISIP---KTFFPEQDTGRLMGFIQADQSISFQAMKRKLQDFMTIVRADPAVDN 594

Query: 601  LYSTINTGGAAGKHRAAILVGLVPLSAREQTPLSLAEPVRKRLSAIPGIEINIL---QNG 657
            +  T  TGG    +  ++ + L PL+ R+ +   +   +R  L+  PG  + ++      
Sbjct: 595  V--TGFTGGMR-TNSGSMFISLKPLAQRDVSAQQVITRLRANLAKEPGANLYLMAVQDVR 651

Query: 658  LGGGES--PVQLSILGDDRAVLEKIANGLVEDMKKIPGLVEVTSSTKDVTSILSVRLKPA 715
            +GG E+    Q S+L DD AVL      + + + K+P L +V+S  +D  + L +     
Sbjct: 652  IGGREANGGYQFSLLSDDLAVLRTWEPKIRDALSKLPQLADVSSDQQDKGAELMMVYDRD 711

Query: 716  AASDLGIARADLAAALSALIGGEDVSKWTDAHGNSYDIVVRLPVERRSDAARLGELMITT 775
            A + LGI  A + A L+   G   +S       N Y +V+ +      D + L ++ +  
Sbjct: 712  AMARLGINVASVNALLNNAFGQRQISTIYQPM-NQYKVVMEVDSAYTQDPSSLDKMFVIN 770

Query: 776  GRTGANGAPLMVRLDQVADIGTVAAPAEIRRFDNRREILVSANI-TGRTLGDVTETLQGL 834
                 +G P  + L   A      AP  +          +S N+  G +L D T  ++  
Sbjct: 771  N----DGKP--IPLSFFARWQPANAPLAVNHQGLSAAATLSFNLPEGASLSDATTAIERT 824

Query: 835  TASRDLPAGYRIRFGGEAETMQETVGHMGTALSMAIIFIYIVLASQFGSFLQPLAIMVSL 894
              +  +P+  R +F G A   Q++       +  AI+ +YIVL   + +   PL I+ +L
Sbjct: 825  MTTLRVPSTVRGQFAGTALAFQQSQHSQVVLIIAAILTVYIVLGILYENVAHPLTILSTL 884

Query: 895  PLSLIGVLLGLMVAGSTINMFSLIGFIMLMGLVTKNGILLVDFANRERRRG-LTLNEALA 953
            P + +G LL L + G   ++ +LIG ++L+G+V KN I++VDFA   +R G L   EA+ 
Sbjct: 885  PSAGVGALLALELFGKPFSLIALIGILLLIGIVKKNAIMMVDFALVAQREGKLPAREAIF 944

Query: 954  NAGVIRFRPIIMTTLAMIFGMIPLGLAVGGGGAQRAPMAHAVVGGLISSTLLTLIVVPVI 1013
             A ++RFRPI+MTT+A +FG +PL L+ G G   R P+   +VGGL+ S LLTL   PV+
Sbjct: 945  RACMLRFRPIMMTTMAALFGALPLVLSNGDGSELRQPLGITIVGGLVMSQLLTLYTTPVV 1004

Query: 1014 LSYIDSITRR 1023
              + DS+  R
Sbjct: 1005 YLFFDSLQWR 1014