Pairwise Alignments

Query, 771 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

 Score =  622 bits (1604), Expect = 0.0
 Identities = 349/770 (45%), Positives = 452/770 (58%), Gaps = 37/770 (4%)

Query: 3   LQTYNAKRSFDKTPEPKGT----KAEKPGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVT 58
           L  YN KR F  T EP G+    K +    SFVIQKHDAR LHYDFRLE+DGVL SWAV 
Sbjct: 5   LSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSWAVP 64

Query: 59  RGPSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWQPIGDAGKGYRK 118
           +GPSLDP  KRLAVHVEDHPLSYG FEG IP GQYG G VIVWDRGIWQP  +  K Y  
Sbjct: 65  KGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRKAYAA 124

Query: 119 GHLEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGGADILEERPESVKT 178
           G L+F L GEKL G W LVR   K    +E WLLIK  D +AR     DI++ +P SV +
Sbjct: 125 GKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNSVLS 184

Query: 179 GRSVEEVAKKPEDTWNSKPVSKKAGASTSGQKQAHALPKGARKQALPSFVPPALATLKPK 238
             SV             KP ++                  ARK ALP    P LATL  +
Sbjct: 185 DASV------------GKPKTRAK----------------ARKTALPEQFTPQLATLVDR 216

Query: 239 PPEGSRWLHEIKFDGYRLQARVDQGKLQLLTRSGLDWTEKFGAAVAAALTALPAETVLID 298
            PEG  W +EIKFDGYR+ AR+  G+++L TR+G DWTE     V  AL AL  +   +D
Sbjct: 217 APEGD-WQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQV-KALQALKLKDSWLD 274

Query: 299 GEIVVERDSGASDFSALQQDLSEGRDDRFVFYAFDLLYLDGSDLRGAALSERKALL-EKL 357
           GE+V     G  DF ALQ     GR    V+Y FD  +L+G D R A + ER+A L E L
Sbjct: 275 GEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKEAL 334

Query: 358 LPAGDPHLRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYVSGRKGEWVKSKCSMRQE 417
             +    LRYS+ F      + + AC L+LEGVI K   S YVS R  +W+K KC + QE
Sbjct: 335 AGSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQE 394

Query: 418 FVIGGYTVSSTSEHAIGSLALGVYENGKLRHVGRVGTGYSGDVAEMIFSRLKPLERKDSP 477
           FVI GYT    S    G+L L V  +  L + GRVGTG+     + I+++L PLE + SP
Sbjct: 395 FVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAGRVGTGFDQAALKAIYAQLTPLECETSP 454

Query: 478 FGDKLTALARRDLHFVKPELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEIEREEKAVS 537
               L++   R +H+VKP LVA+V+F  W+ +  +R A+F GLR DKP  ++  E+    
Sbjct: 455 LAKPLSSAQARGVHWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQPRTV 514

Query: 538 DSNAP--QSQSKIKFTHPDRLYWPNDGVTKEGLADYYAQVWRHMAPFVVNRPLALLRCPE 595
            S  P  ++   +  THPDR+   + G  K+ LA +Y  + + + PF+ +RP++LLR PE
Sbjct: 515 HSKKPVKKTSRDVNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPE 574

Query: 596 GIEGQRFFQKHAWRGINKAIEQIKDPKDKGGEPLIRITDFDGLMALVQSAALEIHPWGAT 655
           GIEG++FFQKH+ R     I+Q+    D G   L+ I +   L+  VQ  ++E H WGAT
Sbjct: 575 GIEGEQFFQKHSERLAIPNIKQLDQSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGAT 634

Query: 656 TANWEKPDMITMDIDPGEDVAWDAVIEAAQELKRRFEEAGLAAFVKTSGGKGLHVVSPLK 715
           +   E PD+  +D+DP   + W A++EAAQ      +E GL AFVKTSGGKGLH++ PL 
Sbjct: 635 SDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLA 694

Query: 716 PQAGWAPVKAFAKAMATDMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRG 765
            +  W  VKAFAK +A  M++  PE++ + +    R G+IFIDYLRN RG
Sbjct: 695 RRDNWETVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARG 744