Pairwise Alignments

Query, 771 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  607 bits (1565), Expect = e-178
 Identities = 342/781 (43%), Positives = 466/781 (59%), Gaps = 38/781 (4%)

Query: 3   LQTYNAKRSFDKTPEPKGTKAEKPGS---SFVIQKHDARRLHYDFRLEMDGVLKSWAVTR 59
           LQ Y  KR F+ TPEP G +     +    F IQKHDA  LHYDFRLE+DG LKSWA+ +
Sbjct: 5   LQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSWAIPK 64

Query: 60  GPSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWQPIGDAGKGYRKG 119
           GPSLDP+ +RLAVHVEDHPL Y DFEG IP+G YG G VIVWDRGIW+P GDA + Y KG
Sbjct: 65  GPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEAYAKG 124

Query: 120 HLEFELEGEKLKGRWHLVRMH--GKPGESRENWLLIKGDDEEARHKGGADILEERPESVK 177
            L F L GEKL G W+L R H  GK    +E W+L+K  D +A  +    I+E  P+SV 
Sbjct: 125 KLRFRLLGEKLGGVWNLFRTHLAGK----KEQWMLVKSHDAQACSETEYSIVEALPDSVL 180

Query: 178 TGRSVEEVAKKPEDTWNSKPVSKKAGASTSGQKQAHALPKGARKQALPSFVPPALATLKP 237
           + R++             K  +KKA A  S +K+A  +    +   LP+ + P LATL  
Sbjct: 181 SERTLVP----------CKSAAKKATAPRSSRKRADKV----QAAPLPAQLQPQLATLVD 226

Query: 238 KPPEGSRWLHEIKFDGYRLQARVDQGKLQLLTRSGLDWTEKFGAAVAAALTALPAETVLI 297
            PP G  W +E+KFDGYR+ AR++   ++L TR+G DW+ K    V AAL AL  ++  +
Sbjct: 227 SPPSGD-WRYEVKFDGYRILARIEGQDIRLFTRNGHDWSSKMPRQV-AALRALGIDSAWL 284

Query: 298 DGEIVVERDSGASDFSALQQDLSEGRDDRFVFYAFDLLYLDGSDLRGAALSERKALLEKL 357
           DGE+VV  ++G +DF ALQ       D+R  +Y FDL +L G DLR   L  R+  L +L
Sbjct: 285 DGEMVVADENGMADFQALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQL 344

Query: 358 LPAGD-PHLRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYVSGRKGEWVKSKCSMRQ 416
           L       ++YS  F+E    +LD ACRL LEG+I K   S Y   R  +W+K KC  RQ
Sbjct: 345 LEHNHCDVIKYSADFDEPVQSLLDSACRLKLEGLIGKRVDSVYSGRRSPDWIKLKCKQRQ 404

Query: 417 EFVIGGYTVSSTSEHAIGSLALGVYEN--GKLRHVGRVGTGYSGDVAEMIFSRLKPLERK 474
           EFVI GYT    S    G+L L +++N  G+LR+ G+VGTG++      I +RLKPLE  
Sbjct: 405 EFVIVGYTDPKGSRSGFGALLLALHDNDSGQLRYAGKVGTGFNATTLASIHARLKPLEIA 464

Query: 475 DSPFGDKLTALARRDLHFVKPELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEIEREE- 533
                        R +H+++P+L+AEV F   + DG +RH+ F GLR+DK A  I+ E  
Sbjct: 465 RPALPSPPAGAEARGVHWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERA 524

Query: 534 ---KAVSDSN----APQSQSKIKFTHPDRLYWPNDGVTKEGLADYYAQVWRHMAPFVVNR 586
              K VS+ N    A ++  +++ THPDR+  P  GVTK  +A+YYA + + + P + +R
Sbjct: 525 MPAKTVSNRNKQAKASENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHR 584

Query: 587 PLALLRCPEGIEGQRFFQKHAWRGINKAIEQIKDPKDKGGEPLIRITDFDGLMALVQSAA 646
           P+AL+R P+G+ G+ FFQK+A  G       +   K + G+  + I   D L+  VQ   
Sbjct: 585 PVALVRAPDGLGGELFFQKNA--GQLYIPNVLSYEKAEAGQAAMVINRADTLLGAVQMNM 642

Query: 647 LEIHPWGATTANWEKPDMITMDIDPGEDVAWDAVIEAAQELKRRFEEAGLAAFVKTSGGK 706
           LE+H W AT  +++KPD   +D+DP   + W A++EA Q      +E GL  F+KTSGGK
Sbjct: 643 LELHTWNATDKDFDKPDRFVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSGGK 702

Query: 707 GLHVVSPLKPQAGWAPVKAFAKAMATDMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRGN 766
           G+HVV PL  +AGW  VK F+ A+   ++K  PE+  +V+    R GRIFIDYLRNG+G 
Sbjct: 703 GIHVVVPLTRRAGWDEVKDFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGA 762

Query: 767 T 767
           T
Sbjct: 763 T 763