Pairwise Alignments

Query, 688 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

 Score =  259 bits (662), Expect = 3e-73
 Identities = 215/660 (32%), Positives = 315/660 (47%), Gaps = 55/660 (8%)

Query: 5   YLDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVNG-ADPRRI 63
           YL  LNE QR+AV          T GP+L++AGAG+GKT  L  R+AHL+    A P  I
Sbjct: 13  YLKGLNEPQREAVL--------TTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEI 64

Query: 64  LLMTFSRRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLN 123
           L +TF+ +AA EM  RV R+    +        + + W GTFH I A++LR +AE +GL 
Sbjct: 65  LAVTFTNKAAREMRERVGRMIGPAV--------EGMPWLGTFHAIAAKMLRRHAELVGLQ 116

Query: 124 IDFTIHDREDSADLMNLVRHELGFSKTESRFPTKGTCLAIYSRAVNSQTPLKDILRQHYP 183
            +FTI D +D   LM  +    G    E R+P +     I        TP +++      
Sbjct: 117 SNFTILDTDDQLRLMKQLIQAEGID--EKRWPARQLAGLIDQWKNKGLTP-EEVGAGEAE 173

Query: 184 WVADWQSELKELFAAYVEAKQIQNVLDYDDLLLYWAQMVS-DPILADDIGNRFDHVMVDE 242
             A  + +  +L+AAY    +  N  D+ DLLL+   ++     + +    RF ++MVDE
Sbjct: 174 GYAHGKGQ--KLYAAYQARLREVNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDE 231

Query: 243 YQDTNRLQASVLMAMKPGGRGLTVVGDDAQSIYSFRAATVRNILDFPACFNPAADIITLD 302
           YQDTN  Q   L  +    + +  VGDD QSIYS+R A V NIL F   F P A I+ L+
Sbjct: 232 YQDTNSSQYLWLRLLAQTRKNICCVGDDDQSIYSWRGAEVANILRFEKDF-PGAVIVRLE 290

Query: 303 RNYRSTQPILAAANGVIDLARERFTKNLWTERQSLERPKLVTVKDETEQANFIIDQILAN 362
           +NYRST  IL AA+GVI     R  K LWT+    E+ +++ V D  E+A  + D+I A 
Sbjct: 291 QNYRSTPHILGAASGVIAENGNRLGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAI 350

Query: 363 RETGTTLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQN 422
              G +L + A+L R    +   E    +  +P+   GG +F + A ++D LA LR    
Sbjct: 351 ARAGGSLDEVAILVRAQHQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQ 410

Query: 423 PRDRVAGFRLLQM-LPGIGPKKAGNILDTIAPDPEPL-LALAEI----PPPPKTGDDWTA 476
           P D +A  R++ +   G+G K    +      +  PL LA A I       P+      A
Sbjct: 411 PADDLAFERIVNVPKRGLGDKAVEKLHRLARAEGIPLALAAARILDTDELTPQARRSLGA 470

Query: 477 FTQLLVGLRRGPNGWP-GEIGLARLWYEPHLERIHEDADTRKA----DLQQLEQIAGGYP 531
           F   L   R      P  E+    L    +   +  +  T  A    +L +L +    Y 
Sbjct: 471 FIGDLARWRDRAAQLPHAELARQILDESGYTATLQAERSTESAGRLENLSELTRAMEEYE 530

Query: 532 SRERFLTELTLDPPDATSDQAGVPLLDEDYLSLSTIHSAKGQEWRSVFILNVVDGCIPSD 591
           +   FL  ++L   +           DE  L++ TIH+AKG E+ +VF+    +G  PS 
Sbjct: 531 TLGAFLEHVSLVMDNEAQQ-------DEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPSQ 583

Query: 592 --LGVGTSQELEEERRLLYVAMTRAKDNLSLITPQRFFTGGQSSQGDRHVYAARTRFIPA 649
             L  G    LEEERRL YVA+TRA+   +++              +R +Y   T  IP+
Sbjct: 584 RALDEGGLNSLEEERRLAYVAITRARKRCTIL-----------HAANRRIYGQWTSSIPS 632