Pairwise Alignments

Query, 688 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  191 bits (485), Expect = 1e-52
 Identities = 186/661 (28%), Positives = 304/661 (45%), Gaps = 99/661 (14%)

Query: 6   LDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVN-GADPRRIL 64
           + +LN +Q++A ++          GPLL++AGAGSGKT+ +  ++AHLI N G   + I+
Sbjct: 1   MSRLNPRQQEARDY--------VGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIV 52

Query: 65  LMTFSRRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLNI 124
            MTF+ +AA EM  RV  + +   G    + T        FH +G  ++R   E++G   
Sbjct: 53  AMTFTNKAAREMKERVATLLRPGEGRGLTVCT--------FHNLGLNIIRKEHERLGYKP 104

Query: 125 DFTIHDREDSADLMN--------------LVRHELGFSKTESRFPTKGTCLAIYSRAVNS 170
            F+I D  D   L++               +++ +G  K +   P +        +A N 
Sbjct: 105 GFSIFDESDIKALLSDIMQKEYSGDDGIDEIKNMIGAWKNDLVLPPEAL-----EKARNP 159

Query: 171 QTPLKDILRQHYPWVADWQSELKELFAAYVEAKQIQNVLDYDDLLLYWAQMVSD-PILAD 229
           +     I+  HY      Q  LK             N +D+DDL+L   ++  + P + +
Sbjct: 160 REQTAAIVYTHY------QRTLKAF-----------NAVDFDDLILQPVKLFQEHPEVLE 202

Query: 230 DIGNRFDHVMVDEYQDTNRLQASVLMAMKPGGRG-LTVVGDDAQSIYSFRAATVRNILDF 288
              NR  +++VDEYQDTN  Q  +L+ M  G R   TVVGDD QSIY++R A   N++  
Sbjct: 203 RWQNRVRYLLVDEYQDTNASQ-YLLVKMLIGMRNQFTVVGDDDQSIYAWRGARPENLMLL 261

Query: 289 PACFNPAADIITLDRNYRSTQPILAAANGVIDLARERFTKNLWTERQSLERPKLVTVKDE 348
              + P+  I+ L++NYRST  IL  AN +I      F K LW+E    +  +++  K+E
Sbjct: 262 KEDY-PSLKIVMLEQNYRSTSRILRCANVLIANNPHAFEKQLWSEMGVGDEIRVIRCKNE 320

Query: 349 TEQANFIIDQILA-NRETGTTLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDS 407
             +A  +  +IL  +  T       A+L+R +  +  +E++L    +P+   GG  F   
Sbjct: 321 EAEAERVAMEILTLHLRTNRPYSDFAILYRGNYQAKLIELKLQHHQVPYRLSGGNSFFGR 380

Query: 408 AHVKDMLAVLRFAQNPRDRVAGFRLLQM----LPGIGPKKAGNILDTIAPDPEPLLALAE 463
             VKD++A LR   NP D  A  R++ +    +     +K GN         E  +++  
Sbjct: 381 QEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIGSTTLEKLGNYA------TERGISMYA 434

Query: 464 IPPPPKTGDDWTA-FTQLLVGLRRGPNGWPGEIGLARLWYEPHLERIHE---DADTRKAD 519
                  G+   A +T+ L   +   +G   ++ L     E  +  +HE   D D     
Sbjct: 435 ASEELGLGEHLDARYTERLQRFKHWLDGVRHKVAL-----EDPIAALHEMIRDIDYENWI 489

Query: 520 LQQL--EQIAGGYPSRERFLTEL---TLDPP---DATSDQAGVPLLDEDYL--------- 562
            QQ   ++ A    S   FL E    TL+     D T + A   L+  D L         
Sbjct: 490 RQQTASDKAAEFRISNVWFLVEALKNTLEKDEEGDMTIEDAIGKLVLRDMLERQQEEEEN 549

Query: 563 ----SLSTIHSAKGQEWRSVFILNVVDGCIPSDLGVGTSQELEEERRLLYVAMTRAKDNL 618
                + T+H++KG E+  VFI+ + +  +P    +  +  +EEERRL YV +TRA+  L
Sbjct: 550 AEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSI-EADTIEEERRLAYVGITRARQTL 608

Query: 619 S 619
           +
Sbjct: 609 A 609