Pairwise Alignments

Query, 357 a.a., ROK family transcriptional regulator from Agrobacterium fabrum C58

Subject, 302 a.a., possible NAGC-like transcriptional regulator (VIMSS) from Escherichia coli BW25113

 Score = 43.9 bits (102), Expect = 5e-09
 Identities = 63/271 (23%), Positives = 97/271 (35%), Gaps = 46/271 (16%)

Query: 74  DLNGTIRHEVR-SDLEDYSFEHIMETAKAAARQVLE---------KAKVKKKDVLGCGIS 123
           DL GT    +   D  +  + H + T +   RQ +E         +    ++  +G GI 
Sbjct: 6   DLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGI- 64

Query: 124 FPGHFKRDRGHVFRIRQFESW-HDIDVDKDFQPYFDFPVFHENDGNTVILSELYYGAGRS 182
            PG      G V       +W +    DKD        V   ND N + +SE   GA   
Sbjct: 65  -PGSISPYTGVVKNANS--TWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAG 121

Query: 183 IRNFAMIWLTYGIGGAVVVQRHLYRGTNGNAGEFGG-----------LFPKSHPRPSGQD 231
            +    + +  G G  V      + G NG AGE+G             + +  P   G+ 
Sbjct: 122 AQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQ 181

Query: 232 LCDTLAVHG----MDIRRLKD-----------IDESYSDHPAVVAWLERATDQLRLLALT 276
            C    + G    MD RRL             ++ES    P     L R   +L      
Sbjct: 182 GCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEES---DPVAELALRRYELRLAKSLAH 238

Query: 277 VARTIDPGAIIFGGSLPDWILEHIVQRIGSL 307
           V   +DP  I+ GG + +  ++ + Q +G L
Sbjct: 239 VVNILDPDVIVLGGGMSN--VDRLYQTVGQL 267