Pairwise Alignments

Query, 307 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECRC99

 Score =  132 bits (331), Expect = 1e-35
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 14/304 (4%)

Query: 1   MKKLL-MATALCIFATP---ALAETRIAVSMTSFDNPFLTILLNGIRAEAGRDKNIELLV 56
           MKKL  + +A+ + AT    A+A+  IA+ +++ +NPF   L +G + EA +     L+V
Sbjct: 3   MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADK-LGYNLVV 61

Query: 57  EDAQLDPSKQLNQVQNFIANGVDAIIVNAVDGDATAAITKAASAAKIPLVYVNHPPAELE 116
            D+Q +P+K+L  VQ+    G   +++N  D DA     K A+ A IP++ ++    + E
Sbjct: 62  LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121

Query: 117 TGLPDGTAFVGSNELDSGTMEAEAACKLMGGKGKAVILMGPLENHAALVRTKDVETVFSK 176
                  + + S+ +  G +  +   K  G   K + L G     AA  R +  +   + 
Sbjct: 122 V-----VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 176

Query: 177 PECKIEILEKQTANWSRTQAQDLVSSWLTAGIQFDAVIANNDEMAIGAAQALKAAGVSMK 236
              K  +L  Q A++ RT+  +++ + LTA     AV A NDEMA+GA +AL+ AG S  
Sbjct: 177 H--KFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-- 232

Query: 237 DVVIAGIDATPDGLAAMQAGDLDITVYQNATKQGEVSVQTAVKAAAGQSTEKTLWVPFEL 296
           DV++ G D TPDG  A+  G L  T+ Q   + G   V+TA K   G+  +    V  +L
Sbjct: 233 DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKL 292

Query: 297 VTPE 300
           V  +
Sbjct: 293 VVKQ 296