Pairwise Alignments

Query, 313 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECRC99

 Score =  124 bits (311), Expect = 3e-33
 Identities = 87/296 (29%), Positives = 153/296 (51%), Gaps = 14/296 (4%)

Query: 6   AIAAFAAMLATGASAQTVGVSMALFDDNFLTVLRNGMIDYSKGMNGVSLQVEDAQNDVGK 65
           A+A  A + A   +  T+ + ++  ++ F   L++G    +  + G +L V D+QN+  K
Sbjct: 12  AVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAK 70

Query: 66  QLSQVQNFVAAGVDAIIVNPVDTDATVALSQAAAAAGIPLVYVNRQPVNLDSLPDKQAFV 125
           +L+ VQ+    G   +++NP D+DA     + A  A IP++ ++RQ    + +    + +
Sbjct: 71  ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVV----SHI 126

Query: 126 ASDEKQSGTLQTQEVCRLLKQAGKTDAKAVVMMGELSNQAARMRTQDIKDVVATPDCSFI 185
           ASD    G +    +    K+AG+  AK + + G     AAR R +  +  VA       
Sbjct: 127 ASDNVLGGKIAGDYIA---KKAGE-GAKVIELQGIAGTSAARERGEGFQQAVAAHK---F 179

Query: 186 KLVEEQSANWSRTQGSDLMTNWLSAGVEFDAVISNNDEMAIGAIQSLKAAGRSMDSVIIA 245
            ++  Q A++ RT+G ++M N L+A  +  AV + NDEMA+GA+++L+ AG+S   V++ 
Sbjct: 180 NVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS--DVMVV 237

Query: 246 GIDATQDALAAMAAGDLDVSVFQNAAGQGKGALDAALKLAKGETIDKKVFVPFELV 301
           G D T D   A+  G L  ++ Q     G   ++ A K+ KGE +  K  V  +LV
Sbjct: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLV 293