Pairwise Alignments

Query, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 534 a.a., microcin C transporter - ATP binding subunit from Pseudomonas putida KT2440

 Score =  443 bits (1139), Expect = e-128
 Identities = 253/556 (45%), Positives = 347/556 (62%), Gaps = 40/556 (7%)

Query: 9   LLSVEGLSVEF--GD--SRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGA 64
           L+ V  L+VEF  GD  +RVVD +SF +  G T+A+VGESGSGKSVT+ S +RL     A
Sbjct: 6   LIEVRDLAVEFVTGDQVNRVVDGVSFDIRKGETLALVGESGSGKSVTAHSILRLLPYPLA 65

Query: 65  TYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK 124
            +P+G I +EGKDLL+ S+K ++ IRG  IAMIFQEPMTSLNP+  I  QI E+L+LH+ 
Sbjct: 66  RHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQINEILLLHKG 125

Query: 125 LGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPT 184
           L    A  +  +LLDMV +P+  + L   PH+LSGG RQRVMIAMALA  P+LLIADEPT
Sbjct: 126 LTGKEATARTLELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPT 185

Query: 185 TALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDI 244
           TALDVT+Q +IL ++++LQ ++GM ++ I+HD+ +V  +A  V VM +G+ VE+     +
Sbjct: 186 TALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRGQIVEQAECATL 245

Query: 245 FANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQKPL 304
           F++PQH YT+ L++A P          P   P+                         PL
Sbjct: 246 FSSPQHHYTQMLINAEP-------SGLPAHNPVGA-----------------------PL 275

Query: 305 LSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQL 364
           L V DL V F I+K    +    + AV  V+F +  G+TL +VGESGSGKST+G  I +L
Sbjct: 276 LEVDDLKVWFPIKKGFLQRTVDHVKAVDGVNFSLPQGQTLGIVGESGSGKSTLGLAILRL 335

Query: 365 QTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTH-- 422
            ++  G I F+G++   ++      +R+E+Q +FQDPF SL PR  V   + E +  H  
Sbjct: 336 ISS-QGGIRFHGQNLEGLNQKAVRPLRREMQVVFQDPFGSLSPRMCVADIVGEGLRIHRI 394

Query: 423 GLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEA 482
           G   +Q+A    +   LE VGL      RYPHEFSGGQRQR+ IARAL   P LI+ DE 
Sbjct: 395 GTAQEQEAA---IIAALEEVGLDPRTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEP 451

Query: 483 LSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQ 542
            SALD ++Q Q++ L  +LQ +  L YLFISHD+AVV+ +SH++ V+  G ++E G  Q 
Sbjct: 452 TSALDRTVQRQVVELLRNLQQKYNLTYLFISHDLAVVKALSHQLMVIKHGHVVEQGDAQA 511

Query: 543 VFETPTHDYTRRLLSA 558
           +F  P H YTR+LL A
Sbjct: 512 IFHAPQHPYTRQLLEA 527



 Score =  179 bits (455), Expect = 2e-49
 Identities = 113/272 (41%), Positives = 160/272 (58%), Gaps = 16/272 (5%)

Query: 301 QKPLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRT 360
           ++ L+ V+DL V F     + G   +R+  V  VSFDI  GETLALVGESGSGKS    +
Sbjct: 3   EQNLIEVRDLAVEF-----VTGDQVNRV--VDGVSFDIRKGETLALVGESGSGKSVTAHS 55

Query: 361 IQQL-----QTAVSGEIAFNGRSYSQMSAAERFRMR-QEVQYIFQDPFASLDPRKTVGFS 414
           I +L         SG I + G+   Q S     R+R   +  IFQ+P  SL+P   +   
Sbjct: 56  ILRLLPYPLARHPSGSIRYEGKDLLQQSEKTLQRIRGNRIAMIFQEPMTSLNPLHCIEKQ 115

Query: 415 IAEPINTHGLINDQKAVRRRVDELLERVGLSS--EHAARYPHEFSGGQRQRVCIARALAS 472
           I E +  H  +  ++A  R + ELL+ VG+    +     PHE SGGQRQRV IA ALA+
Sbjct: 116 INEILLLHKGLTGKEATARTL-ELLDMVGIPEPRKRLKALPHELSGGQRQRVMIAMALAN 174

Query: 473 DPKLIIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLG 532
           +P+L+IADE  +ALDV++Q +I+ L  +LQA  G+A L ISHD+ +V +++HRV V+  G
Sbjct: 175 EPELLIADEPTTALDVTVQLKILELLKELQARMGMALLLISHDLNLVRRIAHRVCVMQRG 234

Query: 533 QIMELGSRQQVFETPTHDYTRRLLSAVPVADP 564
           QI+E      +F +P H YT+ L++A P   P
Sbjct: 235 QIVEQAECATLFSSPQHHYTQMLINAEPSGLP 266