Pairwise Alignments

Query, 511 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  159 bits (402), Expect = 2e-43
 Identities = 144/535 (26%), Positives = 229/535 (42%), Gaps = 61/535 (11%)

Query: 13  VALAMAATAFTAAP-AFAAGKMTISSPQDPGSWDPID-TFLVQWAAVATNIFDGLT-YRG 69
           +   + A   + AP A AA  +   S   P  +DP   T    + A A  +F+ LT +  
Sbjct: 7   IPFLLGAGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQFER 66

Query: 70  PDLKLAPGLAESWEELDEGKRIRFKLRQNVKFHNGE------PFNAAAVKFTFERLLGEQ 123
               + PGLA  WE  D+GK   F LR+ VKFH  +      PFNA  V FTF R+L + 
Sbjct: 67  GGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKD 126

Query: 124 GAKGPQRSNYVA-------------IESVDVIDDYTVDMKLKAPDPVLLTKLAGYGGMIV 170
               P R  Y               I  V+ +D++TV   L   D   +  LA     I 
Sbjct: 127 N---PFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQ 183

Query: 171 PPAY----IKEKGEDNFNLNPVGTGAFKFVSYAPKNNIKLEANPDYWGGAP-KLSELEYR 225
              Y    +K     + N  P+GTG F F  Y     I+ + N DYW     K+  L + 
Sbjct: 184 SAEYADQLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFA 243

Query: 226 FIAEPSTAVAELQAGRVDLVIPPTIPIGMIPVIEGDSKLQIVSVPGPTVDALRFNTRDGI 285
              + S  + +L+     + + P  P  + P ++ D  LQ+    G  +  + +N  D I
Sbjct: 244 ITTDASVRMQKLKKNECQVTLFPR-PADIEP-LKADKNLQMPQQAGFNLGYIAYNVMDKI 301

Query: 286 T--------ADPKVRKAIIMAVDRGTIVKSILAGQASEIASFQSALSFGYDPELKPLPYD 337
                    A  KVR+A+ MAVD+  I++S+  G      +      + YD  +K   +D
Sbjct: 302 KGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKDAAFD 361

Query: 338 PDGAKKLLAEAGVKPGAALQIDI----RGNDATMNEVAQVISSYLSMVGITATIKPYETN 393
           P+ AK+LL EAG+K G  + +      R  +     +A+++ S  + +GI A I  YE  
Sbjct: 362 PEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWG 421

Query: 394 VLLNDIIPQGKTGAMFQQKWGGWTFDYDNTAYSMY-------HSGEKW--NPYDKDEKLD 444
             +      G+ GAM    W G   D DN   ++Y       ++  KW   PY      D
Sbjct: 422 EYIKR-SKGGEQGAML-IGWSGDNGDPDNWLGTLYGCDAVDGNNFSKWCYKPY------D 473

Query: 445 KLLESQRPLTDRAEREKILKELGSYTAERALEIPLYNTNAIYGINKRVKGFVAPP 499
            L++  +  +D+A+R ++ ++      E+    P+ ++     ++ +VK F   P
Sbjct: 474 DLIKQAKATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISP 528