Pairwise Alignments

Query, 432 a.a., multidrug resistance efflux pump from Agrobacterium fabrum C58

Subject, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

 Score =  188 bits (478), Expect = 2e-52
 Identities = 133/377 (35%), Positives = 193/377 (51%), Gaps = 24/377 (6%)

Query: 61  APPQATPAPAVAA-PKAKKRSPLLPIFALALLVGAG-WYGYNWWIDGRFMVSTDDAYIQG 118
           A P  TP P+VA  P  K+++ LL +  L +L G G W  Y+  I GR+  STDDAY+ G
Sbjct: 2   ATPTDTPTPSVAPEPSRKRKAWLLGLLLLLILAGVGTWAWYS--IVGRWHESTDDAYVNG 59

Query: 119 DIAVIAPKVAGYVAKVNVVENQEVKAGDPLVTLDDGDYRIAFEQADAQIRTEQLSLKRID 178
           ++  I P VAG V  +   +   V AG  L+  D  D  +A + A+A+       L R  
Sbjct: 60  NVVEITPLVAGTVTSIGADDGDLVHAGQVLLQFDPADSEVALQSAEAK-------LARSV 112

Query: 179 AQIIGGEAAQEQAVAQKGALDAALRGAEITQKRATELQAKDVGTVAASDNAQVALDQARA 238
            Q+ G  +  +   AQ     A LR A+    R   L   D G +AA +     L  AR 
Sbjct: 113 RQVRGLYSNVDSLKAQLETRQAELRKAQQDFNRRKVLA--DSGAIAAEE-----LSHARD 165

Query: 239 NVVAGEAAISSAKANVELLRAQREE----AESTIRSLQLSKDKAARDLAFTVLKAPYDGV 294
           ++   +AA++SA+  +    A  ++    +   + +      +A  D A T L AP  G 
Sbjct: 166 DLSVAQAAVNSARQQLSTSSALVDDTVVSSHPDVMAAAADLRQAYLDHARTTLVAPVTGY 225

Query: 295 IGNLAVQTGDLVSVGKRLASLVPMNELYIDANFKETQLARVVPGSKVRVHVDAFDDEA-I 353
           +    VQ G  +  G    +++P+++++IDANFKETQL  +  G  V +  D +  E   
Sbjct: 226 VAKRTVQLGQRLQPGTATMAVIPLDQVWIDANFKETQLREMRIGQPVEITADVYGSEVKY 285

Query: 354 EGTVQSISPGSGSVFSMLPPENATGNFTKVIQRVPVRIVFSKEDLAKHNLRAGLSVVVDV 413
            GTV S+  G+GS F++LP +NATGN+ K++QRVPVRI  S + L  H LR GLS VV+V
Sbjct: 286 SGTVDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEV 345

Query: 414 DTRTAPENTRTAQVNPQ 430
           D       T  AQ  PQ
Sbjct: 346 DLHDQSGPT-LAQQPPQ 361