Pairwise Alignments

Query, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  489 bits (1260), Expect = e-142
 Identities = 275/576 (47%), Positives = 370/576 (64%), Gaps = 42/576 (7%)

Query: 17  PVLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKT 76
           P+L V+NL T F +  G    V ++SF I P +T+ +VGESGSGKSVT+ SI++++D   
Sbjct: 6   PLLEVRNLVTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSPG 65

Query: 77  SRIEGKVMLGGRDLLALPEEEM-------RKVRGKDISMIFQEPMTSLNPIFPIGKQIAE 129
               G ++L   D  ++   ++       R VRG DI+MIFQEPM+SL+P+  +G QI E
Sbjct: 66  YITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITE 125

Query: 130 ALTVHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKL 189
            L +H  +S + A+AE I LL +V IPN       Y  Q+SGGMRQR MIAMALA KP+L
Sbjct: 126 VLRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQL 185

Query: 190 LIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVE 249
           LIADEPTTALDVT Q +ILDLI +LQ+  GM+VLFITHDMGVVA++AD  +VM  G V E
Sbjct: 186 LIADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKE 245

Query: 250 TGTTDDIFHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSG 309
            GT + IFH+ Q PYTR L+ +V KL   ++ +  AR           PP+ +T      
Sbjct: 246 YGTVEQIFHKPQDPYTRMLIGSVLKL-EQKAEIRLAR-----------PPLDQT------ 287

Query: 310 GKTPILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGR 369
              PIL VKDL+  F           G + A++ VS  L  GETL +VGESG GK+T GR
Sbjct: 288 -AAPILEVKDLSMHF-----------GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGR 335

Query: 370 SITRLIEPTSGNV---TLDG--YEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTA 424
           SI RL +PT+G +     DG   ++ K++   L+  RR ++MVFQDPF SL+PRM+V   
Sbjct: 336 SIMRLYDPTAGEMLYRRADGSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQV 395

Query: 425 IMEPFMEHRLGQKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPK 484
           I EP + + + +  +  E+   L+E+VGL P   +R+PH FSGGQRQRI IAR++ L P+
Sbjct: 396 IGEPLLVNGIAKGKELEERVCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAITLRPR 455

Query: 485 VIVADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIV 544
           +IVADEA SALDVS++ QV +LL+ LQ  L LA++FISHD+ V+  +  RV VMY G++V
Sbjct: 456 IIVADEATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLV 515

Query: 545 EIGPRAAVFDNPQHPYTKKLMSAVPVPDPARRQIRR 580
           E+G    V + P HPYT+ L+SA+P PDP  R   R
Sbjct: 516 EVGEAEKVCNAPDHPYTQALLSAIPRPDPRDRDRTR 551