Pairwise Alignments

Query, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  241 bits (615), Expect = 2e-68
 Identities = 115/305 (37%), Positives = 194/305 (63%)

Query: 8   RLVSLIITLFAVSLIIYVVMGLLPGDPAAIMLGTSASPDTLAALQKQMGLDQPLPLRYLH 67
           R   +++ L  V+++++V+     GDP +++LG  A+   +A +QK+ GLD+PLP+++ +
Sbjct: 12  RAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDKPLPVQFGY 71

Query: 68  WLAGVFRGDLGQSYTYGVPVAGLIIERLAVTLPLALLAIFLSVTIAIPLGVAAAQNRNGA 127
           WL  V +G+LG S     PV   + ER   T  LAL+A+ ++  I +P G+ +A  R   
Sbjct: 72  WLREVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPCGIVSAVFRGRV 131

Query: 128 LDFAAGLFSHVGIAVPGFWVGLLLIIVFSTTLGWMPSGGFPGWSPSFSAGLVALVLPAIA 187
           +D      + +G ++P FW+G++LI +F+ + GW P  G+      F+  L +LVLPA  
Sbjct: 132 VDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAERLHSLVLPATV 191

Query: 188 LALSQAGVLTRVCRSAVLEVMNEDFVRTARAKGLSERVALWRHAVPNAMIPVVTMIGLQF 247
           L L  + ++ R  R+++L+V+ ED+VRTAR+KGLSE V + +HA+ NA++P+VT+IGL  
Sbjct: 192 LGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNALVPIVTVIGLTV 251

Query: 248 TFLIAGAVLVENVFNLPGLGRLAYQALTQRDIVVMQSVVLFFSALVIIMNFVVDIAYLFI 307
             +I GAV+ E VF LPG+G L   A+ +RD  V+Q  +L  +A+ +++NF +D+ Y  +
Sbjct: 252 ALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFSIDLLYAVV 311

Query: 308 DPRLR 312
           DPR++
Sbjct: 312 DPRVK 316