Pairwise Alignments

Query, 511 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  191 bits (484), Expect = 7e-53
 Identities = 148/484 (30%), Positives = 235/484 (48%), Gaps = 51/484 (10%)

Query: 35  AEAAPKT---ALTLGMTVEPTGLDP--TIAAPVAIGQVTWQNIFEGLVTIDSKGKVKPQL 89
           A AAP +    LTL  T EPT L     +A P+         + EGL+  D     +PQL
Sbjct: 25  AHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSA---KVTEGLLKYDYDVNPQPQL 81

Query: 90  AESWEISPDGKSYTFKLRKGVTFHDGEAFDSAVAKFSLDRARGEASVNPQKR-FFAAIDS 148
           A  W ISPDG +YTF LR+GV +HDG+ F SA   +S++  +    ++P+ R  FA + +
Sbjct: 82  ATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIELLK---KIHPRGRNTFANLTA 138

Query: 149 IETPDADTLVLKLKQPAGSLIYWLGWPASVMVAPK--------SAEANRTTPVGTGPFKF 200
           I+TPD  T +L+L +PA  LI  L       + PK        +   N   P+GTGPFKF
Sbjct: 139 IDTPDKYTAILRLSKPAPYLIRAL-VATETPIVPKHIYEGTDPANNPNNNAPIGTGPFKF 197

Query: 201 VSWAKGDKVELEKNAAYWDKAVAVKLDKATFRFVADPQAQAAALKSGDIDAFPEFGAPEL 260
             W +G  +  E+N  YWDK     +D+   RFV DP A A A ++G +D    +  P  
Sbjct: 198 KEWVRGSHIVYERNNDYWDKPKPF-VDQLIVRFVTDPAAAAVAFETGTVDL--GYRTPVP 254

Query: 261 MTSFDGDKRLGTF----VGNTELKVVAGM--NNARKPFNDKRVRQALMMAVDRGTVIEGA 314
           +   +  K++        GN+    V  +  N   + F +++VRQA+  A+DR  +++  
Sbjct: 255 LADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNVIVKVV 314

Query: 315 WSGYGTAIGSHYTPNDRGYVD-TTGVHSFDIDKAKALLAEAGY---ADGFSFTIKA---P 367
             GYG    S   P  + + D     ++FD+ KA ALL EAG+   A G  F++     P
Sbjct: 315 NYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVRFSVPLDFNP 374

Query: 368 QMAYAQRTSQILQAMLAEIGVTMTIETTEFPAKWVADVLKGADYDMTIVAHAEPMDIDIY 427
             A   R +  L++ LA IG+ +T+   + P+ ++  +    D+  T    +   D  + 
Sbjct: 375 IGADGPRLADYLRSALARIGIAVTVRAQD-PSAFIKRIYTDRDFAFTHNGASNLFDPTVG 433

Query: 428 ARDPYY-------------FNYKNPAFNEVIANVEKTANAGEQEALYGDAQKILAEDVPA 474
            +  Y+              +Y+NP  ++++ +     + G++  L+ D Q  +A DVP 
Sbjct: 434 VQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTVARDVPD 493

Query: 475 LFLF 478
           L L+
Sbjct: 494 LNLY 497