Pairwise Alignments

Query, 322 a.a., ribose ABC transporter permease from Agrobacterium fabrum C58

Subject, 332 a.a., putative ABC transporter permease protein YphD from Escherichia coli ECRC101

 Score =  138 bits (347), Expect = 2e-37
 Identities = 87/291 (29%), Positives = 159/291 (54%), Gaps = 8/291 (2%)

Query: 24  AFLLLVGELLSPGFAQGSQIVRLLTIAAILGIVAAGQNLVILGGREGIDLSVGAMISLGA 83
           A L LV  L +PGF   +  + +L  AA +GI A    L+I+ G   ID+SVG M++  +
Sbjct: 34  AILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGE--IDVSVGPMVAFVS 91

Query: 84  VLAGNMMNGQNAGIPLAI--LVAGGIPFLIGLINGLGITFVRIPPLVMTLGMTAVIQGGL 141
           V    ++  +   +PLAI  L+   +  L+G + G+      +P  V TLG+ + ++G  
Sbjct: 92  VCLAFLLQFE---VPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMG 148

Query: 142 VVYSQGVPSGAAAPLLAGFINRPLIFGIPGVLFVWLGIAAIMLFVLRRTAFGFAIYAIGS 201
           +  +  +P       +  ++    + G+P    + + + A+ +F+ R+TAFG +++A+G 
Sbjct: 149 LFMTNALPVPIDENEVLDWLGGQFL-GVPVSALIMMVLFALFVFISRKTAFGRSVFAVGG 207

Query: 202 NERAATLVGLPVPLIRTLLYGLSGLFAGLTGVCVIGYTGTSFISVGDQYVLPSIIAVVIG 261
           N  AA L G+ V  +R L++ LSGL A +TG+ +    G+      +      I AVV+G
Sbjct: 208 NATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVG 267

Query: 262 GTSLAGGAGGYVGTMAGAVALTILQSVLITLNLDVWARQIIFGVTLLALML 312
           GT+L+GG G   GT+ G + +T++ + L+ L ++ + +Q++ GV ++  +L
Sbjct: 268 GTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVL 318



 Score = 23.1 bits (48), Expect = 0.010
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 48  TIAAILGIVAAGQNLVILGGREGIDLSVGAMISLGAVLAGNMMNGQNA 95
           T+  +L I   G  LV+LG        V  +I + AVLA  ++  +++
Sbjct: 281 TLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSS 328