Pairwise Alignments

Query, 612 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  235 bits (600), Expect = 3e-66
 Identities = 152/425 (35%), Positives = 234/425 (55%), Gaps = 10/425 (2%)

Query: 184 LANIDSLTGLPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRLL 243
           LA  D LTG+ NR+ F A L   LA    +G  +ALG +DLD F+ VND  GH  GDRL+
Sbjct: 123 LAEQDPLTGIANRQGFQALLNARLAENEGRG--VALGHLDLDNFRHVNDALGHQSGDRLI 180

Query: 244 INVSKRLTANLKASKAF-RLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGTV 302
           + V  RL   L+A     RLG DEFA++     D  +    A  I E L  PY +   ++
Sbjct: 181 LQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIVEALAEPYWIDGESL 240

Query: 303 HVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIEHL 362
            +  S+GIA      S  + L   A  A+  AK ++     +F+    +     A +E  
Sbjct: 241 LLGCSLGIA-HARAQSGADPLMWHAHIAMRQAKGSQGCTFHVFNERINRNARSLADLESE 299

Query: 363 LKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVGSL 422
           L+++  ++EL + +QP +++ DG+  G EAL RW     G +PP++F  +AE++G++  L
Sbjct: 300 LRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFVPLAEQSGLIVPL 359

Query: 423 -----TRPLLKMALASASTWDPSLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRLDL 477
                +R L  M        +P L ++ NLS +     + + +L  +I     D R L+ 
Sbjct: 360 GYWVISRALRDMQALCERGLEP-LHMAVNLSFRQFQDSQLLATLSRLILEHGVDARWLEF 418

Query: 478 EITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVTD 537
           E+TETA     E VRQ++D L RLG   SLDDFGTG+SS   L++LP+T +K+DRSFV +
Sbjct: 419 ELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDRSFVAE 478

Query: 538 LHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPLREWD 597
           +  +  + K+V +++ L+ ++ LE V EGVE+  +LT L G G   VQG++ + PL   +
Sbjct: 479 MEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQVQGFLVSRPLPIGE 538

Query: 598 VAAFL 602
           + A+L
Sbjct: 539 LMAYL 543