Pairwise Alignments

Query, 531 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  145 bits (366), Expect = 4e-39
 Identities = 138/531 (25%), Positives = 233/531 (43%), Gaps = 47/531 (8%)

Query: 11  LLLGSLLLGASSALAETVLHRGNSGEPQTLDQAQ--TSINIEAFILKDLFEGLTIYDAAG 68
           LL   LL GA SA+A + L   + G P   D  Q  T  + +A   + +F  LT ++  G
Sbjct: 10  LLGAGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASA-ETVFNRLTQFERGG 68

Query: 69  K-IVPGTAESWTLSDDGTVYTFKLRADAKW------SDGTPVTAGDFVFSYQRVEDPKTA 121
             ++PG A  W +SDDG  YTF LR   K+          P  A D +F++ R+ D    
Sbjct: 69  TAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNP 128

Query: 122 AKYANIL-YPIKNAEKINKGETPVDQLGVKAVDDKTLEITLERSTPFFLELLAHQTALPI 180
            + A    +P      ++K    V++L     D+ T++ TL      F++ LA   A  I
Sbjct: 129 FRKAYPTEFPYFTDMGMDKNIAKVEKL-----DEHTVKFTLNEVDAAFIQNLAMSFA-SI 182

Query: 181 SKASYE----KNGTNFVKPGVMVSNGAYKLEAHVPNDSLTVVKNTDFWDASNTKIDKVIF 236
             A Y     KNG         +  G +    +  +  +    N D+W   + KID +IF
Sbjct: 183 QSAEYADQLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIF 242

Query: 237 YPIDDQAASVRRFEAKEMDLAYNFSADQIDRLRKSYGEQVHVSPTLATYYYTFDTREA-- 294
               D +  +++ +  E  +        I+ L+     Q+         Y  ++  +   
Sbjct: 243 AITTDASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIK 302

Query: 295 ------PYDDVRVRQALSMAVDRDFLAKEIYSGSQVPAYSMVPPGMDSYGEPAKADFATL 348
                 P   ++VRQAL MAVD+  + + +Y G+   A + +PP   SY +  K      
Sbjct: 303 GSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKD----- 357

Query: 349 SQLDREDEALKLMKDAGYGEGGKPL--SIEIRYNTNPNHERVATAIADMWKNTFGAKVSL 406
           +  D E +A +L+K+AG  EG +    ++ ++   NPN + +A  +   W    G K  +
Sbjct: 358 AAFDPE-KAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAK-IGIKAKI 415

Query: 407 VNLDVASHYGYLQEGGKFNVARAGWVADYADAENFLAL-----SVSSNKTFNYSKFNNAE 461
           V+ +    Y    +GG+      GW  D  D +N+L       +V  N   N+SK+    
Sbjct: 416 VSYE-WGEYIKRSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDAVDGN---NFSKWCYKP 471

Query: 462 YDSLMQKSYNEKDPAARSKLLHEAETILMKEQPVAPLLTQADLWLVSNRVK 512
           YD L++++    D A R++L  +A+ IL ++ P+ P+        +S +VK
Sbjct: 472 YDDLIKQAKATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVK 522