Pairwise Alignments

Query, 307 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

 Score =  186 bits (471), Expect = 8e-52
 Identities = 113/313 (36%), Positives = 176/313 (56%), Gaps = 9/313 (2%)

Query: 1   MISFILRRLASAVPTLFIVVTISFFLMRFAPGGP--FNLERPLPPQTMENLMRTYHLDEP 58
           M+ FIL++LA AVPTL ++  + F L+R  PG P    L     PQ++ ++  T  LD  
Sbjct: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADPQSLADMRHTLGLDHS 60

Query: 59  LWRQYLIYLRNAVTGDFGPSYIYKDNTVAQLIGKGLPYSLELGSYALLLALVGGVLAGTL 118
           L  Q+LI+ +  ++ D G S   K   V  LI      S  +   A+L A +  V  G +
Sbjct: 61  LVTQFLIWFKAVLSFDLGFSISTKQ-AVLPLILDRFSVSATIVLVAVLFATLIAVPIGLI 119

Query: 119 AALRQNSAFDFSLMSISTVGITVPNFVVAPVLTLVFAVILGLLPAGSWGDGS------LR 172
           AA +QNSA D  L+SI+T+ +++P+F +  +L   F + LG LP   +   S      + 
Sbjct: 120 AAWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAPWQAMS 179

Query: 173 YLILPMIALALPQLAVIARLTRGAMIEALRMDHIRTAKAYGLPARSVVVLHAMRAAMLPV 232
           Y++LP++ L L ++  I R+ R + IE LR+++I  A+A GL  R+V+  HA+  A  P 
Sbjct: 180 YMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHALPNAFAPT 239

Query: 233 VSYLAPCAAALLTGSAVIETIFTIPGVGRYFVLGAINRDYTLVMGTVVLVAIFVIVFNLL 292
            + +      LL G AV+ET+FT+PG+GR  V     RDY ++ G ++L+    ++ NL 
Sbjct: 240 WTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFIYVLVNLC 299

Query: 293 VDILYGLLDPRVR 305
           VD+LY L DPRV+
Sbjct: 300 VDLLYPLFDPRVK 312