Pairwise Alignments

Query, 307 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 313 a.a., nickel ABC transporter permease subunit from Pseudomonas putida KT2440

 Score =  171 bits (434), Expect = 2e-47
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 8/310 (2%)

Query: 1   MISFILRRLASAVPTLFIVVTISFFLMRFAPGGP---FNLERPLPPQ--TMENLMRTYHL 55
           M+ +IL RLA  VP +     + F L+      P   +     +PP    +  +  T  L
Sbjct: 1   MLRYILLRLALLVPVMLGASLLVFVLLHLGSTDPALDYLRLSHIPPTDAAIAEVRHTLGL 60

Query: 56  DEPLWRQYLIYLRNAVTGDFGPSYIYKDNTVAQLIGKGLPYSLELGSYALLLALVGGVLA 115
           D PL+ QYL +L NAV  DFG SYI     +  L+   LP +L+LG  AL   L+  +  
Sbjct: 61  DRPLYAQYLSWLWNAVHLDFGISYITGRPVLDDLLYY-LPATLQLGGLALACTLLLSIPL 119

Query: 116 GTLAALRQNSAFDFSLMSISTVGITVPNFVVAPVLTLVFAVILGLLPAGSWGDGSLRYLI 175
           G LAA  Q    D ++ +++ +G+++PNF +A +L  +F++ LG LP    G G   +L+
Sbjct: 120 GLLAARWQGRWPDHAVRAVTFLGVSMPNFWLAFLLIALFSLWLGWLPP--LGRGGAGHLV 177

Query: 176 LPMIALALPQLAVIARLTRGAMIEALRMDHIRTAKAYGLPARSVVVLHAMRAAMLPVVSY 235
           +P++A+AL  +++ ARL R ++++A    H+  A+A GLP R V   H +R A LP+V+ 
Sbjct: 178 MPVLAIALMSMSINARLLRASLLDAGGQRHVTYARARGLPERHVWRDHILRNAWLPLVTA 237

Query: 236 LAPCAAALLTGSAVIETIFTIPGVGRYFVLGAINRDYTLVMGTVVLVAIFVIVFNLLVDI 295
                  LL G+ VIETIF  PGVGR+ V   +NRD+ ++    +L+   +++ NL+VD+
Sbjct: 238 TGMHIGELLGGALVIETIFAWPGVGRFAVSAVLNRDFPVMQCFTLLLTGLLMICNLIVDV 297

Query: 296 LYGLLDPRVR 305
            Y  LDPR R
Sbjct: 298 CYAWLDPRSR 307