Pairwise Alignments
Query, 511 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58
Subject, 539 a.a., ABC transporter, ATP-binding protein from Pseudomonas putida KT2440
Score = 381 bits (978), Expect = e-110
Identities = 222/505 (43%), Positives = 318/505 (62%), Gaps = 10/505 (1%)
Query: 3 AVKGIDIDVKQGETLAVVGESGSGKSQTMMGIMGLLASNGIIE-GSAKYRGHELIGLPVN 61
A++ + + QGETLAVVGESGSGKS ++GLL N I+ G G ++
Sbjct: 25 ALRQLSFSLVQGETLAVVGESGSGKSTLANALLGLLPGNARIDQGQLWVDGVDMAQASER 84
Query: 62 ELNDIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIIYHRGGSKRQARARVLELLKLVGIP 121
+RG I ++ Q+PM SL+P RIG QIAE + RG A+VL LL VG+
Sbjct: 85 ARRQLRGRTIGLVPQDPMVSLNPTQRIGQQIAEALQLARGRRYPGQEAKVLALLDQVGLD 144
Query: 122 EPERRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQQ 181
EP R YPHELSGG RQRV+IA+ALA EP ++IADEPT+ALDVT+Q +ILD L+ L
Sbjct: 145 EPALRARQYPHELSGGMRQRVLIAIALAGEPRLIIADEPTSALDVTVQRRILDHLQLLVA 204
Query: 182 RFGMAVVLITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLDAEPS-- 239
G+++++ITHDLG+ A+R+ VM++GE VE G+ I + YT+ LLDA P+
Sbjct: 205 ERGISLLIITHDLGMACDRADRLLVMKQGEQVEHGSPRQILWGARQPYTRALLDAAPAFV 264
Query: 240 -GHKPAVGSEAPVVLSGKNVTIDYKIPGGFLSKSSKFRAVDSVNVDLHQGQTIGIVGESG 298
+PA +L +V +++PG K+ + A+ ++++LH GQT+ IVGESG
Sbjct: 265 PRRRPAAPRGQTPLLRLSHVGKRFELPG----KNEHYTALHDLSLELHAGQTLAIVGESG 320
Query: 299 SGKSTLGRALLRL-IVSEGRIFFGKTEITGLDRKAMRPLRRHLQLVFQDPYGSLSPRQTV 357
SGKST R L L S+G++ F ++TG RPLRR +QLV Q+P+ +L PR TV
Sbjct: 321 SGKSTALRIALGLEKPSQGQVVFAGEDVTGYTWSQFRPLRRRIQLVQQNPFAALDPRFTV 380
Query: 358 GEIITEGLFVHEQQLSRAERDKRAIEALKEVGLDPAARNRYPHEFSGGQRQRIAIARAII 417
+ + E L V L +++A E + V L +R P E SGGQRQR+AIARA+
Sbjct: 381 FDSVVEPL-VSFGLLRGEALERKARELITRVQLPVQFLDRLPRELSGGQRQRVAIARALA 439
Query: 418 LKPEVVILDEPTSALDRSVQGQVIDLLRDLQKAHGLSYIFISHDLSVIKAISDYVIVMRN 477
L+PEV++LDEP SALD SVQ Q++ LL +LQ+ G++Y+ +SHDL+V+ +++D V+V+R
Sbjct: 440 LEPEVLLLDEPVSALDVSVQAQILALLDELQRELGMAYVLVSHDLAVVASMADQVLVLRR 499
Query: 478 GKIVEEGETDAIFSRPTAEYTKTLI 502
G++VE+G + S+ + YT+ LI
Sbjct: 500 GQVVEQGPALQVLSKSASAYTRALI 524
Score = 169 bits (427), Expect = 3e-46
Identities = 96/241 (39%), Positives = 147/241 (60%), Gaps = 11/241 (4%)
Query: 3 AVKGIDIDVKQGETLAVVGESGSGKSQTMMGIMGLLASNGIIEGSAKYRGHELIGLPVNE 62
A+ + +++ G+TLA+VGESGSGKS + +GL + +G + G ++ G ++
Sbjct: 299 ALHDLSLELHAGQTLAIVGESGSGKSTALRIALGLEKPS---QGQVVFAGEDVTGYTWSQ 355
Query: 63 LNDIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIIYHR--GGSKRQARARVLELLKLVGI 120
+R +I ++ Q P +LDP + + + EP++ G + +AR L + +
Sbjct: 356 FRPLR-RRIQLVQQNPFAALDPRFTVFDSVVEPLVSFGLLRGEALERKAREL----ITRV 410
Query: 121 PEPERRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQ 180
P + +D P ELSGGQRQRV IA ALA EP++L+ DEP +ALDV++QAQIL LL LQ
Sbjct: 411 QLPVQFLDRLPRELSGGQRQRVAIARALALEPEVLLLDEPVSALDVSVQAQILALLDELQ 470
Query: 181 QRFGMAVVLITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLDAEPSG 240
+ GMA VL++HDL VV A++V V+RRG++VE G + + + YT+ L+DA P G
Sbjct: 471 RELGMAYVLVSHDLAVVASMADQVLVLRRGQVVEQGPALQVLSKSASAYTRALIDAIP-G 529
Query: 241 H 241
H
Sbjct: 530 H 530
Score = 159 bits (403), Expect = 2e-43
Identities = 106/271 (39%), Positives = 159/271 (58%), Gaps = 24/271 (8%)
Query: 247 SEAPVVLSGKNVTIDYKIPGGFLSKSSKFRAVDSVNVDLHQGQTIGIVGESGSGKSTLGR 306
S++P++ +++++ Y G + +A+ ++ L QG+T+ +VGESGSGKSTL
Sbjct: 2 SQSPLI-EVRDLSVSYSFAG------QRSQALRQLSFSLVQGETLAVVGESGSGKSTLAN 54
Query: 307 ALLRLIVSEGRIFFGKTEITGLD-----RKAMRPLR-RHLQLVFQDPYGSLSPRQTVGEI 360
ALL L+ RI G+ + G+D +A R LR R + LV QDP SL+P Q +G+
Sbjct: 55 ALLGLLPGNARIDQGQLWVDGVDMAQASERARRQLRGRTIGLVPQDPMVSLNPTQRIGQQ 114
Query: 361 ITEGLFVHEQQLSRAER----DKRAIEALKEVGLD-PAARNR-YPHEFSGGQRQRIAIAR 414
I E L QL+R R + + + L +VGLD PA R R YPHE SGG RQR+ IA
Sbjct: 115 IAEAL-----QLARGRRYPGQEAKVLALLDQVGLDEPALRARQYPHELSGGMRQRVLIAI 169
Query: 415 AIILKPEVVILDEPTSALDRSVQGQVIDLLRDLQKAHGLSYIFISHDLSVIKAISDYVIV 474
A+ +P ++I DEPTSALD +VQ +++D L+ L G+S + I+HDL + +D ++V
Sbjct: 170 ALAGEPRLIIADEPTSALDVTVQRRILDHLQLLVAERGISLLIITHDLGMACDRADRLLV 229
Query: 475 MRNGKIVEEGETDAIFSRPTAEYTKTLIKSA 505
M+ G+ VE G I YT+ L+ +A
Sbjct: 230 MKQGEQVEHGSPRQILWGARQPYTRALLDAA 260