Pairwise Alignments

Query, 336 a.a., polyamine ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  174 bits (441), Expect = 3e-48
 Identities = 104/342 (30%), Positives = 167/342 (48%), Gaps = 12/342 (3%)

Query: 6   VLSTCAALFALGA--AAQANDLVFSSWGGTTQDAQKAAWAEKFMVETGINVLQDGPT-DY 62
           V   CAAL ALG   A  A  +V   +GG  Q AQ  A  + F+ + G  ++Q     + 
Sbjct: 7   VTGLCAALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNGEM 66

Query: 63  GKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKT-KLDPRFVTDYSVGSF 121
            +++ M +   V WDVV +EG    +   +G+ E+LD+  +    +L P    D    + 
Sbjct: 67  ARIQVMADTGNVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELIPAAAQDCGSAAL 126

Query: 122 YYSFVIGCNVDSVSACPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLY- 180
            +S  I  +   ++  P SWAD +D  K+PGKR   K +    +E ALLADGV  + +Y 
Sbjct: 127 VWSVAIAYDRSKLAQAPASWADFWDVDKYPGKRGLRKRAVYN-LEFALLADGVKVEDVYR 185

Query: 181 ----PLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKV 236
               P  ++RAF KL  +K  I WW  GAQ  Q +A+ +    S ++GR+    Q G  +
Sbjct: 186 VLSTPAGVERAFAKLSELKPHIQWWDAGAQPAQWLAAGDVVMTSTYSGRIAVAAQQGSPL 245

Query: 237 ETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSAQAQADMATATGYAPVNIESAKLMD 296
              W  ++   D   + KG+++ D A + IA A     Q        Y P N ++A  +D
Sbjct: 246 AVVWPGSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDTQVRYVQQIPYGPTNTQAAARLD 305

Query: 297 PKIAKSLP--DQQTESQVNADMNYWAQHRDEIGERWYAWQAK 336
           P +A  +P   Q  +  +  ++ +W  H +E+ +R+ AW +K
Sbjct: 306 PALANWVPTSPQNLQGALAMNVEFWVDHGEELEQRFNAWASK 347