Pairwise Alignments

Query, 336 a.a., polyamine ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Escherichia coli ECRC62

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 36/322 (11%)

Query: 11  AALFALG-AAAQAND---LVFSSWGGTTQDAQKAAWAEKFMVETGINVL----QDGPTDY 62
           A   ALG +AA A+D   L F +W     +       E+F  ETGI V+    +   T Y
Sbjct: 11  AGALALGMSAAHADDNNTLYFYNW----TEYVPPGLLEQFTKETGIKVIYSTYESNETMY 66

Query: 63  GKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDK-TKLDPRFVT------- 114
            KLK   +     +D+V     Y  +   +G+++K+D S +   + LDP  +        
Sbjct: 67  AKLKTYKDG---AYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNN 123

Query: 115 DYSVGSFYYSFVIGCNVDSVSACPKS---WADLFDTAKFPGKRTFYKWSAPGVIEAALLA 171
           DYS+   + +  IG N D+V   PKS   WADL+   ++ G        A  V + AL  
Sbjct: 124 DYSIPYIWGATAIGVNGDAVD--PKSVTSWADLWKP-EYKGSLLLTD-DAREVFQMALRK 179

Query: 172 DGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQ 231
            G + +   P +++ A+ +L  +  ++  ++    +   +   E   G +WNG      Q
Sbjct: 180 LGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYM-EGEVNLGMIWNGSAFVARQ 238

Query: 232 SGVKVETSWAQN--ITAADSLVVPKGTKNKDAAMKFIALATSAQAQADMATATGYAPVNI 289
           +G  ++  W +   I   DSL +P   KNK+ A+K I           +A   GY   N+
Sbjct: 239 AGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNL 298

Query: 290 ESAKLMDPKIAKS---LPDQQT 308
            + KL+ P++A      PD +T
Sbjct: 299 AARKLLSPEVANDKTLYPDAET 320