Pairwise Alignments

Query, 374 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 286 a.a., ABC transporter, membrane spanning protein (agrocinopine) from Agrobacterium fabrum C58

 Score =  148 bits (374), Expect = 2e-40
 Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 9/227 (3%)

Query: 145 PLFLFGADRLGRDVFSRVVQGSQISLSIGLVGVFFSLLLGVVLGGISGYYGGRIDFVMQR 204
           P  L G D LGRDV S ++  +Q SL I LVG      +G  LG ++ ++GG +D ++  
Sbjct: 64  PGHLLGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMG 123

Query: 205 VIDFVLSLPTIPIWLAMAAALPQGWPATLQYMMITIILSLTGWAQLARVVRGRFLSLRTE 264
             D   S+P I   L + A L          +++ +++ +  + + AR+ RG  LS   E
Sbjct: 124 FADAKASVPFIIFALGVLAFLGSS------PLILLMLVGVASFERYARLTRGLVLSANQE 177

Query: 265 EFVAAARLDGVPEGRIIFRHMLPSFSSHIIASVTLAVPAMILAETSLSFLGLGLQPPTIS 324
            +  AAR+ GVP  RI  RH+LP+ +  +I  +TL  P +IL E+ LSFLGLG+QPP  S
Sbjct: 178 GYAEAARIVGVPSLRIYVRHVLPNIAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETS 237

Query: 325 WGVLLREAQNIRSIATAPWLF-LPGVAVVVAVMALNLLGDGLRDAAD 370
            G+++ + +N   IA A WL  LPGV +V+  ++++LLGD LRD  D
Sbjct: 238 LGLMVADGRNY--IAIAWWLIALPGVVIVLTTLSISLLGDYLRDRFD 282