Pairwise Alignments

Query, 649 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score = 92.4 bits (228), Expect = 5e-23
 Identities = 122/521 (23%), Positives = 198/521 (38%), Gaps = 100/521 (19%)

Query: 102 LVRWNMDFTEVLPNLAEKWEVSPDASEFTFHLIEGAK------WSDGHPFTADDVVFAIE 155
           L ++    T V+P LA KWEVS D   +TFHL EG K      +    PF ADDV+F   
Sbjct: 61  LTQFERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFN 120

Query: 156 DCI-KNKELYSATPAQ------LSVAGKAVDVSKVDDFTVKFKFAAPNALYLENLATPLG 208
             + K+     A P +      + +      V K+D+ TVKF     +A +++NLA    
Sbjct: 121 RMLDKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFA 180

Query: 209 QHPTLFPKHYCSKFLPKYNAALDAEVKAAGVSSWTELFRAKCGDIEIPSRWSNVDKPTLD 268
              ++    Y  + L K   A D   K  G                 P  +S   K    
Sbjct: 181 ---SIQSAEYADQLL-KNGKAADINQKPIGTG---------------PFVFSKYQKD--- 218

Query: 269 PWVVKEPYSGGATRVVMTRNPYFWQVDTDGNQLPYINEINFGISQDVESLMLNVISGKID 328
                        ++    N  +WQ +        I+ + F I+ D    M  +   +  
Sbjct: 219 ------------AQIRFKGNKDYWQPED-----VKIDNLIFAITTDASVRMQKLKKNECQ 261

Query: 329 IQERHISVLANKPTLSQNMEKGNYRLMTLVPSAAQQCQIYLNITHKDPAMRKM--FADKS 386
           +       L  +P   + + K +  L     +      I  N+  K     +    A   
Sbjct: 262 V------TLFPRPADIEPL-KADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANPMAQLK 314

Query: 387 FRQALSLGLNRQEIIEIVYFGQSEAYQTGPRPTHPWYHEKLARQSTEFDADKANELLDKA 446
            RQAL + +++++IIE VY G  +       PT   Y + +  +   FD +KA +LL +A
Sbjct: 315 VRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSI--KDAAFDPEKAKQLLKEA 372

Query: 447 GYDKKNGNGIRLRPDGQPIFFSIDVIPTLYPDLVDTLELVKAQWAQIGVDIKVNTIERAL 506
           G   K G  I L        +++ V     P+     E++++ WA+IG+  K+ + E   
Sbjct: 373 GI--KEGTEITL--------WAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGE 422

Query: 507 YYTRGDDNAHDAAV--WPGPGGLDPMLDPRDFFAFHPQGSRYAIPWALWYTSNGQKGEEP 564
           Y  R       A +  W G  G     DP ++                  T  G    + 
Sbjct: 423 YIKRSKGGEQGAMLIGWSGDNG-----DPDNWLG----------------TLYGCDAVDG 461

Query: 565 PESQKKRFKLFD----EARSTADIAKRGEFMKQIFDIAAEE 601
               K  +K +D    +A++T+D AKR E  ++   I  E+
Sbjct: 462 NNFSKWCYKPYDDLIKQAKATSDQAKRTELYQKAQHILKEQ 502