Pairwise Alignments

Query, 615 a.a., cold-shock dead-box protein A from Agrobacterium fabrum C58

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  269 bits (687), Expect = 3e-76
 Identities = 176/550 (32%), Positives = 293/550 (53%), Gaps = 28/550 (5%)

Query: 9   PAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALATTLLSENTR 68
           P I  A+   GY++ + +QQ  +   +A KD +  AQTG+GKT AF + +   +      
Sbjct: 15  PNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAFALPILHCIDPAKRE 74

Query: 69  FGQASAPLALAIAPTRELAMQVKRELE-WLYEFAGVSIASCVGGMDIRNERRALERGAHI 127
                 P AL +APTRELA+QV    E +  +  GV++ +  GG  +  + +A+  GA I
Sbjct: 75  ------PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQI 128

Query: 128 VVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDRRTLMFSA 187
           VV TPGRLCDH++R+   LS++  +VLDEADEML LGF +DLE I +  P  R+T++FSA
Sbjct: 129 VVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVLFSA 188

Query: 188 TVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALRFYEARNA 247
           T+P+SI  +AE + ++   +   ++ +    IE   LLV    + +A+++ L   +    
Sbjct: 189 TLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDAL 248

Query: 248 IVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVATDVAARG 307
           I+F  T+ A   L + L  +G+   AL+G++ QN+R   + +++DGR  + VATDVAARG
Sbjct: 249 IMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARG 308

Query: 308 IDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLLEGAKVSA 367
           +D+P +  V + D+P + E+ +HR GRTGRAG++G + ++V   +RR  + +        
Sbjct: 309 LDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKV 368

Query: 368 AWVRPPSVEEIVERDGARLLADPTLSEAVTDDER---DFVNKLLEQHGA--EKVAAAFVR 422
           A VR P  + +++    +L    +LS  V D E    D +++L    G     +AAA +R
Sbjct: 369 AEVRLPDAQAVLDARIKKL--TNSLSPLVADAESTHGDLLDRLTADIGCTPRALAAALLR 426

Query: 423 LYHSGRSAPEDIFEV--ALDNTRKPRRDSFETTENNAPRRDRSDFSDSAWFSLSVGR--- 477
              +G++      E    L     PR D     E +  R DR D    A   L+ GR   
Sbjct: 427 KATNGQALTLAAIEKERPLVPNSAPRGD---RPERSGDRPDRGDRERRAPVPLAEGRARC 483

Query: 478 ------KQSAEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDM 531
                 +     + L+  +   G + R+ IG I+++ + + VEL  D +++  + +    
Sbjct: 484 RTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLKDTR 543

Query: 532 MLEKGIRLKQ 541
           +  K ++L++
Sbjct: 544 VAGKQLKLRR 553