Pairwise Alignments

Query, 188 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score =  154 bits (389), Expect = 1e-42
 Identities = 82/161 (50%), Positives = 111/161 (68%), Gaps = 2/161 (1%)

Query: 5   PEQTEYNFKREMLAALPNLRAFAISLIRSRDRADDLVQDTIMKAWAKQDSFQPGTNMRAW 64
           P  ++  FK ++ A LP LRAFA SL  +RD ADDLVQ+T++KAW  ++ +  GTN RAW
Sbjct: 12  PRLSDAEFKAQLAAVLPQLRAFARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAW 71

Query: 65  LVTILRNEFYSQIRKSGREVQDTDGVYTSR-LSVPPEQHGSVDLQDFRTALAKLPDDQRE 123
              ILRN F S++R+  R V + D +   R L+ P +Q  SV+L+D   AL +LP  QRE
Sbjct: 72  AFVILRNHFLSEMRRK-RFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQRE 130

Query: 124 AILLIGASGFAYEEAAEICGCPVGTIKSRVSRARLRLQELL 164
           A++L+GA G +YEE AEI G  VGTIKSRV+RAR+ L++LL
Sbjct: 131 ALILVGAGGISYEETAEIVGVAVGTIKSRVARARVALEQLL 171