Pairwise Alignments

Query, 317 a.a., aliphatic sulfonate ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

 Score =  218 bits (554), Expect = 2e-61
 Identities = 122/311 (39%), Positives = 184/311 (59%), Gaps = 4/311 (1%)

Query: 6   RRALSAGLIAAVALSVLPFAAQAAEE---LKIGYQKTGLPVIARQQGVIEKALEAKGVKV 62
           RR L  GL+A+VA ++LP++   A++   L+IGYQK     I +  G +EKAL  +GVKV
Sbjct: 12  RRLLIGGLLASVASALLPWSEAIADDARTLRIGYQKFNSINILKGSGALEKALAPQGVKV 71

Query: 63  SWVEFTAGPPLVEALNVGSINVGWTGDAPPIFGQAAGSAIVYVAALPSNGKGEAIFTKPE 122
           SW EF AGP L+EAL+ G+I++G   DAP +F QAAG  +VY+AA     +G  +  + +
Sbjct: 72  SWHEFAAGPQLLEALSTGAIDLGHAADAPSVFAQAAGKPVVYLAAEQPYPRGIGLVVREQ 131

Query: 123 SGIKSVADLKGKKVGVGKGTSAHNLLVAALEKNGLKLSDIDVTYL-SPADAAAAFASDKI 181
             + SV DLKGK+V  G+G +A  LL  AL++ GL   DI   Y+ + ADA AA  S  +
Sbjct: 132 DHLASVQDLKGKRVATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAADAVAALQSGSV 191

Query: 182 DAWAVWDPFYAIAETRYKPVTLARTSDVLDVKTYFLANRDYAKSHADTINTNVGALGEAA 241
            A  +WDPF A AE++     L   S + + +T++L+   +A  H   + T    LG+ +
Sbjct: 192 QAVTLWDPFLAAAESQPGLKNLRDGSGLSNNRTFYLSTASFADQHRALLKTFFAELGKVS 251

Query: 242 KWSAANRDKVAAALHEVTGVPLEAQTLAANRSEFGITRIDDKIVASQQETADRFYRLGLI 301
           +W+ A   +VAA L    G+  +   +A+ R  +    I  +IVA QQ+ AD F  LGLI
Sbjct: 252 QWANAKPAEVAALLAPQLGISTQVLEVASERRNYNAVAITPQIVAEQQKLADTFQGLGLI 311

Query: 302 PKQISIKDAVW 312
           P+++ + +AV+
Sbjct: 312 PRKLQVAEAVY 322