Pairwise Alignments

Query, 566 a.a., 30S ribosomal protein S1 from Agrobacterium fabrum C58

Subject, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 192 VQNLEEGQVVDGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQ 250
           + +L+EG +++G V N+  +GAFVDLG   DGL+HV+ ++ + VN   E++  G  VKV+
Sbjct: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724

Query: 251 IIRINQETHRISLGMK 266
           ++ ++    RI L MK
Sbjct: 725 VMEVDVARKRIGLSMK 740



 Score = 53.1 bits (126), Expect = 4e-11
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 274 DGIS--AKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTS 331
           DG+   A    G  + GTV+N+  +GAFV+L    +GL+H+S++S    N    +++ T 
Sbjct: 660 DGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVN-DAREVVKTG 718

Query: 332 QEVDVVVLEVDPSKRRISLGLK 353
             V V V+EVD +++RI L +K
Sbjct: 719 DIVKVKVMEVDVARKRIGLSMK 740



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 370 GTEVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVD 429
           G  +EG V N  +FG F+ L    DG+VH+S L  ++      E    GD+VK  V++VD
Sbjct: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLS-HKFVNDAREVVKTGDIVKVKVMEVD 729

Query: 430 VEKERISLGIK 440
           V ++RI L +K
Sbjct: 730 VARKRIGLSMK 740