Pairwise Alignments

Query, 991 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

Subject, 795 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  290 bits (742), Expect = 3e-82
 Identities = 171/397 (43%), Positives = 240/397 (60%), Gaps = 14/397 (3%)

Query: 446 ARVEMEMAERRQTEKALQQAQKMESIGQLTGGVAHDFNNLLQVIAGNLQLLSKDVIGNE- 504
           AR+  ++ ER + E ALQQ Q++E++GQLT GVAHDFNNLL VI      L +D+   + 
Sbjct: 403 ARLREQINERERIEAALQQMQRLEAVGQLTAGVAHDFNNLLTVILTGASFLERDLAKADL 462

Query: 505 -RAERRLENALAGVHRGAKLASQLLAFGRRQALEPRVINIARFVTGMDDLLRRSLGEGIE 563
            +A  RL +      RGAKL SQLLAF RRQ LEP  +N+ R + G+++LLRR+LG  I 
Sbjct: 463 DKARTRLTHIREAGERGAKLTSQLLAFSRRQRLEPVPLNLNRTLAGLEELLRRTLGGNIS 522

Query: 564 VEVITSGGLWNTYADPNQVENALLNLAINARDAMEGHGKLTIEVGNAVLDRDYARKHSEV 623
           V +     LW    DP Q E  +LNLAINARDAM   G+LT+   N ++D+   ++  + 
Sbjct: 523 VRLDLDLALWQALTDPTQTEMIILNLAINARDAMSDGGQLTLTTRNTLIDK-RPQRPEDP 581

Query: 624 SAGQYVMLAVTDTGSGMSPEILEKVFEPFFSTKPEGKGTGLGLSMVYGFAKQSSGHVNIY 683
             G+YVML++ DTG GMS E+L KVFEPFF+TK  GKG+GLGL+ V+GFAKQS G V I 
Sbjct: 582 DPGEYVMLSIRDTGCGMSEEVLAKVFEPFFTTKDIGKGSGLGLAQVFGFAKQSGGGVRID 641

Query: 684 SEVGQGTTVKMYLP---RSAADEDREVVMPTGPVEGG-TETILVVEDDEEVRNTVVETLG 739
           + +G+GT V +YLP       +E    V+     E G   T+L+V+DD  VR+ + + L 
Sbjct: 642 TTLGRGTEVAVYLPAVKEEMVNEPVPAVLSQSISESGHNRTVLLVDDDHLVRDMLGDVLR 701

Query: 740 DLGYRVLTARDAQAGLTVVESGIPIDVIFTDVVMPGSLKSREMARRAQERLPNLAVLFTS 799
             GY+V  A   +  L +++    ID++ TD  MP      ++A  A+ER P L V+F +
Sbjct: 702 QYGYQVRQAHSGEQALALLDD--DIDLLLTDFAMP-EFNGAQLALAARERYPRLPVVFLT 758

Query: 800 GYTENSIVHGGKLDAGVELLSKPYTREALARRLRHVI 836
           GY E   + G +L  G  ++ KP   + LAR L  ++
Sbjct: 759 GYAE---LQGLEL-PGSLVIQKPVQADELARALNEML 791



 Score = 67.4 bits (163), Expect = 4e-15
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 4/122 (3%)

Query: 858 LSQTASAVDSENRSIRVLLVEDDELIRMNSTEMLSDSGFAVVEAGNAAQALEVIEADPID 917
           LSQ+ S     NR+  VLLV+DD L+R    ++L   G+ V +A +  QAL +++ D ID
Sbjct: 670 LSQSISE-SGHNRT--VLLVDDDHLVRDMLGDVLRQYGYQVRQAHSGEQALALLD-DDID 725

Query: 918 VLVTDLGLPDMKGGELAAEALRRKPGLAIVFATGDSHLPEGAPESAVLLTKPYDEQQIVA 977
           +L+TD  +P+  G +LA  A  R P L +VF TG + L       ++++ KP    ++  
Sbjct: 726 LLLTDFAMPEFNGAQLALAARERYPRLPVVFLTGYAELQGLELPGSLVIQKPVQADELAR 785

Query: 978 AV 979
           A+
Sbjct: 786 AL 787



 Score = 30.8 bits (68), Expect = 4e-04
 Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 281 EERKRSEQEILISNNRFRAAVEAVHGVLWT-NSADGRMRGEQPAWTAMTGQTPEEYQDFG 339
           + R+R+E+ +     R R A++A     W     +G +  +    T     T  E     
Sbjct: 129 QRRRRAEEALADVEARARIAIDAAGMGTWDLRPQEGLLLWDDRCKTLFGVPTSTEMSLEV 188

Query: 340 WADAVHPEDRQGSVDSWNRAVAEKST--YLWEHRVRRHDGVYRTFSIRGVPIFDKDGAIA 397
           +   ++P+D     ++   A+  +S   Y  E R+ + +G+   + +        D    
Sbjct: 189 FYAGIYPDDLPLVREAVEHAMRPESDGHYRVEFRIAQPNGLEPRWLLSSGQSQFVDDQCV 248

Query: 398 EWVGVHTDITEQRQSEDTLKEHASNLEREIRHRIRAEEQLRQLNEGLEARVEMEMAER 455
            + GV  DI  QRQ                     A + LRQLNE L  RVE    ER
Sbjct: 249 RFSGVLQDIHAQRQ---------------------ATQALRQLNEMLGERVERRTRER 285