Pairwise Alignments

Query, 332 a.a., glycine betaine ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 336 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

 Score =  413 bits (1062), Expect = e-120
 Identities = 194/336 (57%), Positives = 246/336 (73%), Gaps = 4/336 (1%)

Query: 1   MKILLGATILSAGFAFSGGAAYAAD----CGNVTIASMNWQSAEVAANLDKFILEKGYGC 56
           MK LL +TIL  GF  + GAA +A+    CGN+TIA MNW SA VAA +DKFI+E GY C
Sbjct: 1   MKKLLASTILVTGFITAAGAANSANAAETCGNITIAEMNWASAGVAAYVDKFIMENGYDC 60

Query: 57  SAEIVTGDTVPTLTSMAEKGQPDIAPEAWVSLQPEIVKHGLEGGKVVAAAKILSDGAVQG 116
           +  +++GDT PT TSM EKGQPD+APE WV+      +  ++ G ++   KILS+G V+G
Sbjct: 61  TVNVISGDTTPTFTSMNEKGQPDMAPEMWVNTLGTPYEEAVKKGNLIQEVKILSEGGVEG 120

Query: 117 WWIPKYLADANPDLKTIPDLFKHPELFPAPEDKSKGAVFNGPQGWGGTVVTAQLFKAFGG 176
           WWIPKYLAD +PD+KT+ D  KHPELFPAPED SKGAVF  P GWG    TA LFKA   
Sbjct: 121 WWIPKYLADEHPDIKTVEDALKHPELFPAPEDASKGAVFGCPPGWGCQPTTANLFKARKA 180

Query: 177 EKAGFTLVDTGSAAGLDGSIAKAYEAKQPWVGYYWAPTSLLGKYEMVKLGFGTEYDAAEW 236
           ++ GF L+DTGSAAGLDGSI+ AYE KQ W+GYYW+PT++LGKY+MVKL  G   D   +
Sbjct: 181 DEKGFALIDTGSAAGLDGSISNAYEKKQGWLGYYWSPTAILGKYDMVKLDDGVALDREAY 240

Query: 237 KRCTSVADCPDPKPNAWQVDDVQTLVSKSFADRAGPAMDYLNKRAWTNATVNKLIAWMTD 296
             C +  DC DPKPNA+ V +V T+V+K FA++AGP++DY+ KR W NATV  ++AWM D
Sbjct: 241 DTCIAKPDCADPKPNAYPVAEVFTVVTKDFAEKAGPSIDYIRKRQWDNATVAGVLAWMDD 300

Query: 297 NQATGEDGAKQFLKENEALWKGWVSPEVAEKVKAAL 332
           NQ T EDGA+ FL+ +E +W  WVSPEVAEK+KA++
Sbjct: 301 NQGTNEDGAEYFLENHEDIWTKWVSPEVAEKIKASM 336