Pairwise Alignments

Query, 222 a.a., ribosomal large subunit pseudouridine synthase A from Agrobacterium fabrum C58

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

 Score =  103 bits (258), Expect = 3e-27
 Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 21/222 (9%)

Query: 18  LTIVHRDDDLLVLDKPSGLLSVPGR---DPALSDSLMTRVQK--QFPKALMINRLDKDTS 72
           L IV+ DDD+LV++KP+GL+  P     D  L ++L+  V      P+  +++RLDKDT+
Sbjct: 83  LDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRCGIVHRLDKDTT 142

Query: 73  GIVLMSLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRHRVD 132
           G+++++   +A   +  Q + R   + Y  IV G V    G+++ P+      + R  V 
Sbjct: 143 GLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVA-GGKINAPIGRHGQQRQRMAV- 200

Query: 133 HENGKPAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFYAEG---- 188
            E GK A S +RVLER     T + +   TGRTHQ+RVHM  +  P++GD  Y       
Sbjct: 201 MEGGKQAVSHYRVLERF-RSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAYGGRFRIP 259

Query: 189 --------EALTAAPRLMLHAQEVGFRHP-DGRDVTYTVPCP 221
                   ++L   PR  LHA+ +   HP  G+ +++  P P
Sbjct: 260 PAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESPLP 301