Pairwise Alignments

Query, 338 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECRC99

 Score = 71.2 bits (173), Expect = 3e-17
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 17/249 (6%)

Query: 1   MAFRKMLLASAAVACAALPITAHA---DTSAKKIALSNNYAGNSWRQAMLTSWDKITKQA 57
           M  +K+    +AVA +A  ++A+A   DT A  ++  NN    S +       DK+    
Sbjct: 1   MNMKKLATLVSAVALSAT-VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL 59

Query: 58  VADKQVAAADAFTTAENQATEQAAQIQNLILQGYDAIVINAASPTALNGAVKEACDAGIT 117
           V             ++N   ++ A +Q+L ++G   ++IN     A+  AVK A  A I 
Sbjct: 60  VV----------LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 109

Query: 118 VVSFDGIVTE-PCAWRIAVDFKAMGESQIDYLAKAMPKGGNLLEIRGLAGVSVDDEIHAG 176
           V++ D   T+      IA D    G+   DY+AK   +G  ++E++G+AG S   E   G
Sbjct: 110 VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEG 169

Query: 177 IAAGVAKNPQFKIVGSVNGDWAQDVAQRAVAGILPSLPEVAAVVTQGGD-GYGAAQAFAA 235
               VA + +F ++ S   D+ +      +  +L + P+V AV  Q  +   GA +A   
Sbjct: 170 FQQAVAAH-KFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT 228

Query: 236 AKRPTPTIV 244
           A +    +V
Sbjct: 229 AGKSDVMVV 237