Pairwise Alignments

Query, 315 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 326 a.a., ABC transporter, membrane spanning protein (ribose) from Agrobacterium fabrum C58

 Score =  112 bits (281), Expect = 9e-30
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 10/306 (3%)

Query: 8   TRKPWIWSFAATA---AVWIITVLFTGGASSFGLSHAALTFAAFSVIVGI---GQMFVIT 61
           TR P  W   AT     + ++ V  T  + +F      L       ++GI   G  FVI 
Sbjct: 13  TRSPLAWLSGATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVLGIMAVGMTFVIL 72

Query: 62  LGPGNIDLCVPATMTLSGTLALKFMDVSDSLILPGLLIAILIGIAIGIGNYALIKLLRIP 121
           LG   IDL V + + LS  +     +V+   +   +++A++   A G+    L+   R+P
Sbjct: 73  LG--GIDLSVGSVLALSMMIMGWTANVAGMPMGMAIVLALVASAACGLVVGILVTAFRVP 130

Query: 122 PIIATLSMSFIVQSIAIWSNRGLRIKP-PETLATFAISSSFGIPNVALVALLLSV-IAWL 179
             IATL+M  + + +A     G +I   P+     AI   FG+    ++ +L+ V ++W 
Sbjct: 131 AFIATLAMMSVARGLANMITDGQQIVGFPDWFMMLAIERHFGVLTATVLLMLVVVLVSWA 190

Query: 180 LLDRTFYGRWIAAIGQSTFAARMTGIPVDGTRFVTYVLCAVLAAIAGYLLASFSGGAALN 239
            L     GR + A+G +   AR+ GI V       YV+CAVLA +AG +LA+       +
Sbjct: 191 FLRFRSEGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVLAARLDSVQPS 250

Query: 240 MGSEYLLMSIAVVVIGGTAVSGGDSNVPGIWGASLFMFLVVSMLNTYGFGAGIRLILTGL 299
            G  Y L +IA VVIGGT++SGG   + G     L + ++ + LN       ++ ++ G+
Sbjct: 251 SGFGYELDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVSPFLQQVIIGV 310

Query: 300 IIISVI 305
           +I+  +
Sbjct: 311 VIVLAV 316