Pairwise Alignments

Query, 815 a.a., nitrite reductase large subunit from Agrobacterium fabrum C58

Subject, 1399 a.a., nitrite reductase small subunit NirD from Dickeya dianthicola ME23

 Score =  459 bits (1180), Expect = e-133
 Identities = 285/782 (36%), Positives = 423/782 (54%), Gaps = 28/782 (3%)

Query: 5    LVIIGNGMAPGRMLENLFETA-PGLYDVTIFNAEPRVNYDRIMLSPVLSGEKSYEDIVIH 63
            LV++G+GM     LE L E +    Y V +F  E    YDR+ LS   +G +S E + + 
Sbjct: 424  LVVVGHGMVGHHFLEQLVERSLHQQYHVVVFGEERHPAYDRVHLSEYFAG-RSAESLSMV 482

Query: 64   NDEWYAANNVTLHKGAKVTRIDRANKIVTSENGITASYDRLVIATGSLPFIIPVPGHQLP 123
            +D ++  + + L  G +VT IDR  + V   NG    YDRLV+ATGS PF+ P+ G+  P
Sbjct: 483  SDGFFEQHGIELRTGCQVTEIDRQRRCVRDANGQETPYDRLVLATGSYPFVPPMAGNDRP 542

Query: 124  GVLAYRDLDDVTKMLEIAKGKGRAIVIGAGLLGLEAAYGLKRQGMDVTVIHLMPTIMERQ 183
            G L YR LDD+  +   A+     +V+G GLLGLEAA  L++ G++  V+   P +M  Q
Sbjct: 543  GCLVYRTLDDLDAIAAQARESRSGVVVGGGLLGLEAANALRQLGLETHVVEFAPRLMAVQ 602

Query: 184  LDPAAAYLLEKALNERGIDIITKANTKCIL-GEEKVEGIELEDGRIIKGDMVVMAVGIRP 242
            LD   A LL++ +   G+ + T   T+ I  GE+    +   DG  ++ D+V+ + GIRP
Sbjct: 603  LDDGGAQLLKRKIEALGLQVHTGKETRAITAGEQARHRMNFADGTALETDLVLFSAGIRP 662

Query: 243  ASGLAKEAGIAVNR--GIVVDDGMMTSDASIYALGECAEHRGMCYGLVAPLYESARVLAD 300
               LA++AG+      GIV++D  +TSD +I+A+GECA  +G  +GLVAP Y+ AR +A 
Sbjct: 663  RDQLARDAGLETGARGGIVINDSCLTSDDAIFAIGECALWQGQMFGLVAPGYQMARTVAA 722

Query: 301  RLCGGSAE------YHGSVTNTKLKVTGINLFSAGDFAEGDDREEIVLR--DATAGVYKR 352
            RL   + +      + G+  +TKLK+ G+++ S GD A G     +  +  D    VYK+
Sbjct: 723  RLAQMAQQEQQEQSFTGADMSTKLKLLGVDVASIGD-AHGHTEGSLSYQWNDEPNQVYKK 781

Query: 353  LILKEN--RIIGAVLYGETADGSWFFDLMKKSTDISAMRETLIFGQAYQGGSPLDPMAAV 410
            +I+  +  R++GAVL G+++D S    +      + A  E+LI   A  G +P      V
Sbjct: 782  IIVSADGKRLLGAVLVGDSSDYSTLLQMKLNDMTLPAHPESLIL-PALDGAAPKG--LGV 838

Query: 411  AALPDDAEICGCNGVCKGKITSAITSKGLTSLDDVRAHTKASASCGNCTGLVEQLMTLTL 470
            AALPD A+IC C+ V K  I +A+ + G T L  ++A TKA   CG C  L++Q+M   L
Sbjct: 839  AALPDSAQICSCHNVSKADICAAVDN-GCTDLASLKACTKAGTGCGGCVPLLKQVMEYQL 897

Query: 471  GDTYNPAAVQPMCKCTDLGHDDVRRLIKAKGLKTIPAVMQELEWKTSCGCAKCRPALNYY 530
              +      + +C+       ++  LI+   +++   ++         GC  C+P     
Sbjct: 898  QQS-GIEVKKDICEHFAYSRQELYHLIRVNRIRSFDELLTR--HGHGLGCEICKPLAGSM 954

Query: 531  LVCDFPDEYA--DDYQSRYINERVHANIQKDGTYSVVPRMWGGVTNADELRAIADVVDKF 588
            L   + D     +    +  N+R  ANIQKDG+YSVVPR+ GG      L AI  V  ++
Sbjct: 955  LASCWNDYVLKPEHVPLQDTNDRFLANIQKDGSYSVVPRIPGGEITPQGLIAIGQVAARY 1014

Query: 589  EIPLVKVTGGQRIDLLGIEKEDLPAVWADLGKAGFISGQAYAKGLRTVKTCVGEQWCRFG 648
             +   K+TGGQR+DL G   E LPA+W +L  AGF +G AY K LRTVK+CVG  WCR+G
Sbjct: 1015 HL-YTKITGGQRVDLFGARLEQLPAIWQELIDAGFETGHAYGKSLRTVKSCVGSTWCRYG 1073

Query: 649  TQDSTGLGIRIEKFMWGSWTPAKLKLAVSGCPRNCAEATCKDIGVICVDSGFEIHFAGAA 708
             QDST L I +E    G  +P KLK+AVSGC R CAEA  KDIGVI  D G+ ++  G  
Sbjct: 1074 VQDSTALAIALEHRYKGLRSPHKLKMAVSGCTRECAEAQGKDIGVIATDKGWNLYVCGNG 1133

Query: 709  GLDIKGTEVLGLVHTEDEALEHIVALTQMYREQARYLERIYKWAKRI--GYDEVRRQIMD 766
            G+  +  ++       D     I  L   Y      L+R   W   +  G D +R+ ++D
Sbjct: 1134 GMKPRHADLFASDLDTDTLFRLIDRLLMFYIRTGDRLQRTSVWLDNLEGGIDYLRQVVVD 1193

Query: 767  DA 768
            D+
Sbjct: 1194 DS 1195



 Score =  273 bits (697), Expect = 6e-77
 Identities = 164/409 (40%), Positives = 241/409 (58%), Gaps = 16/409 (3%)

Query: 1   MTQKLVIIGNGMAPGRMLENLFETAPGLYDVTIFNAEPRVNYDRIMLSPVLSGEKSYEDI 60
           M+  LVIIGNG++  R+++ L + AP  Y VT+ + EPR +Y+R++LS VL GEK++ED 
Sbjct: 1   MSAHLVIIGNGLSSARLVKRLGQLAPQRYRVTVIDREPRDSYNRVLLSSVLGGEKTFEDT 60

Query: 61  VIHNDEWYAANNVTLHKGAKVTRIDRANKIVTSENGITASYDRLVIATGSLPFIIPVPGH 120
            +      A  +VT+  G     IDR  + VT++    A YD+LV ATGS PF+  +PG 
Sbjct: 61  QLEPAP--ATMDVTILTGESALSIDRDAREVTTDRRRLA-YDQLVFATGSRPFMPLLPGI 117

Query: 121 QLPGVLAYRDLDDVTKMLEIAKGKGRAIVIGAGLLGLEAAYGLKRQGMDVTVIHLMPTIM 180
            LPGV+ +R LDDV +M    +     +VIG GLLG+EAA  L+ QG  VT++H    +M
Sbjct: 118 DLPGVMGFRTLDDVERMWAAVRQGRPVVVIGGGLLGIEAAAALRLQGATVTLLHRHARLM 177

Query: 181 ERQLDPAAAYLLEKALNERGIDIITKANTKCILGEE----------KVEGIELEDGRIIK 230
           ERQLD  A+ LL   L+ERGI  +T    + +   E          +VE +EL DG  + 
Sbjct: 178 ERQLDATASDLLCSRLHERGIRCLTGVQIRALSSNEWCGNEWSGNGQVEAVELADGTRLP 237

Query: 231 GDMVVMAVGIRPASGLAKEAGIAVNRGIVVDDGMMTSDASIYALGECAEHRGMCYGLVAP 290
             +VV+A G++P   LA+++G+A  RGI+ D  + T+D  I A GECAE +G   GLVAP
Sbjct: 238 AGLVVVATGVQPVCELARDSGLACGRGILADGQLRTADEYISAFGECAEVKGETVGLVAP 297

Query: 291 LYESARVLADRLCGGS-AEYHGSVTNTKLKVTGINLFSAGDFAEGDDREEIVLRDATAGV 349
               A VLA RL G   A+Y  +   T+LKVTGI++ SAG+    +      L D   G 
Sbjct: 298 CLAQADVLAARLAGRPVADYAPAALATRLKVTGIDVVSAGELHPQEGDRLHSLSDPLGGH 357

Query: 350 YKRLILKENRIIGAVLYGETADGSWFFDLMKKSTDISAMRETLIFGQAY 398
           Y+RLI +++R+ GA+L+G  +D      +M+    +S+   +L+FG ++
Sbjct: 358 YRRLIFRDDRLCGALLFGHVSDSPQLLAVME--ARLSSAPSSLLFGLSF 404