Pairwise Alignments

Query, 321 a.a., ribose ABC transporter permease from Agrobacterium fabrum C58

Subject, 328 a.a., L-arabinose ABC transporter permease AraH from Dickeya dianthicola ME23

 Score =  150 bits (380), Expect = 3e-41
 Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 8/299 (2%)

Query: 11  YRVTIILGATLVIAALTVPGFVSLTTAS-LGLDRGASIGIVAIGLTVLLIAGQIDLSVGA 69
           Y + ++  A  +   L VP F +      LGL    S G+VA G+   L +G  DLSV +
Sbjct: 25  YGMLVVFAALFLACMLFVPNFATFVNMKGLGLAISMS-GMVACGMLFCLASGDFDLSVAS 83

Query: 70  VFALSGIV-AISLQAELGIWPAAALGVLTGIAAGVFNGILTVVFKINALVATLASMLIFR 128
           V A +G+  A+ +     +W     G+L G+A G+ NG +    KINAL+ TLA+M I R
Sbjct: 84  VIACAGVTTAVVINVSESLWLGVGAGLLLGVAFGLLNGFVIAQLKINALITTLATMQIVR 143

Query: 129 SLAHWITGSQPVSGTDITFAVTLSQVYAEIFTTRSALFMAGIVMLDFWL--RRTVSGRNL 186
            LA+ I+  + V   D  F  TL   YA      + +++  I M+ F L   +T  GRN 
Sbjct: 144 GLAYIISDGKAVGIEDERF-FTLG--YANWLGLPAPIWLTVICMVLFGLLLNKTTFGRNT 200

Query: 187 FAVGSNPVAAEASGISSGRTLFLGFIFAGALAGLAGVFESLTTNTGSPVFGAEITVVIIA 246
            A+G N  AA  +G+   RT  + F  +G ++  AG+  +    +G P+      +++I+
Sbjct: 201 LAIGGNEEAARLAGVPVVRTKIIIFGLSGLVSAAAGIILASRMTSGQPMTSIGYELIVIS 260

Query: 247 AVVVGGTRLEGGRGSALGTLGGVLTIAALTTAMEFQSVPAYVQQIVNGLILILLVVLDR 305
           A V+GG  L+GG G     + GVL +  +  AM   ++  + Q +V GLIL+  VV DR
Sbjct: 261 ACVLGGVSLKGGIGKISYVVAGVLILGTVENAMNLLNISPFAQYVVRGLILLAAVVFDR 319