Pairwise Alignments

Query, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  153 bits (387), Expect = 6e-42
 Identities = 121/354 (34%), Positives = 171/354 (48%), Gaps = 18/354 (5%)

Query: 15  ALASCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVI----TGEVRARVQTDLSFRVSGKII 70
           AL +C  +  P + P  T  VV A    V   S +    +G V AR Q+DL FRVSGKI+
Sbjct: 16  ALVACG-DSSPGKDPRDTPPVVKAVS--VQDASALARSFSGVVVARTQSDLGFRVSGKIL 72

Query: 71  ERLVDVGARVKTGQLLARIDPEEQKADIDVALANLQSAEAQQTQAQLTFD---RQQNLFK 127
           +RLVD G  VK GQ L R+DP +       A A  ++  A + +A+ T D   R + L  
Sbjct: 73  QRLVDTGQTVKRGQPLMRMDPVDLNLQ---ARAQQEAVTAARARAKQTGDDEARYRGLVA 129

Query: 128 TQVTSRSAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTELRADADGVITARNVEVGQV 187
               S S+ D+ +      +  + +AQAQ D AR+A  Y  L ADADGV+     E GQV
Sbjct: 130 DGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQV 189

Query: 188 AQAAQLVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLLSDPAQIVAAPVREISPTID 247
             A Q V  LA  G R+AV  VY    L     +    +L   PAQ V A +R +S   D
Sbjct: 190 VSAGQAVVRLARAGQREAV--VYLPETLRPAPGSTALATLFGKPAQAVPAKLRLLSDAAD 247

Query: 248 PDNGTIRVKVGLNGDM-TMPLGAPVSGHFRFRQID--AIELPWSAMASQDGAPAVWLVDP 304
           P   T   +  L G + + PLGA ++        D  A ++P  A+        VW++  
Sbjct: 248 PITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAG 307

Query: 305 RSSEVAMRPVQVADYETGQFVVTEGLNPGDLVVTVGTKFLRAGEKVAYEKGQAQ 358
           + ++V+ R V+V      + VV   L+ GD +V +G   LR G +V  +   AQ
Sbjct: 308 QPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQAQTAQ 361