Pairwise Alignments

Query, 1023 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score = 1233 bits (3191), Expect = 0.0
 Identities = 615/1013 (60%), Positives = 789/1013 (77%), Gaps = 3/1013 (0%)

Query: 4    FNLSDWALEHRSLVWYFMLVFVLAGVFSYLNLGREEDPNFTIKTMVISAQWPGASAEEVA 63
            FNLSDWAL+H+S VWY M V +L G+FSY NLGREEDP+FTIKTMVI  +WPGA+ +E  
Sbjct: 5    FNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETL 64

Query: 64   RQVTDRIEKKLEELDNLDHLRSQTVAGRTTIFVELVPETKARNVEPTWVRVRNMIGDIKG 123
             QVTDRIEKKLEELD+LD+ +S T  G +T++V L   TKA+++   W +VR  I DI+G
Sbjct: 65   YQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRG 124

Query: 124  EFPSGVVGPFFNDRFGDVYGNIYAFTSDGLSQRQLRDLVEDARAKVLTVDDIGKVDVIGA 183
            EFP+G+ GP FND FGDV+G+IYAFT+DGL+ RQLRD VE ARA+V  V +IGK++++G 
Sbjct: 125  EFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGT 184

Query: 184  QDEAIYLEFSTRQIAALGIDQQSIIKTLQSQNAVTQSGFVNAGPERVALRVSGQFTSEDS 243
            QDE +YL FSTR++AALGIDQ+ +++ LQ+QNAVT +G + AGPER+++R SGQF SE  
Sbjct: 185  QDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKD 244

Query: 244  LRSINLRVNNRFFPLTEVATIRRGYVDPPSSLFRFNGQPAIGLAIGMKTGANLLHFGEAL 303
            L+++NLR+N+RFF L ++A I RGYVDPPS +FR+NGQ AIGLAIGMK G N+  FG AL
Sbjct: 245  LQTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGAAL 304

Query: 304  DAQMKRVVADLPVGVDVHRVSDQPAVVDEAVSGFTSALFEAIAIVLVISFISLGLRAGMV 363
              +M +VV DLPVGV VH VSDQ  VV +AV GFTSALFEA+ IVL +SF+SLG+RAG+V
Sbjct: 305  KKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRAGLV 364

Query: 364  VAVSIPLVLAITFVYMEYTGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEVGDDLR 423
            VA SIPLVLA+ FV+MEY+GI++QRISLGALIIALGLLVDDAMI VE+MV RLE+G+   
Sbjct: 365  VACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGESKE 424

Query: 424  KAATYVYTSTAFPMLTGTLVTVAGFIPVGLNNSAAGEFTFTLFVVIAVSLIVSWIVAVLF 483
            +AAT+ YTSTAFPMLTGTLVTVAGF+P+GLN S+AGE+TFTLF VIAV+LIVSW+VAV F
Sbjct: 425  QAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAVFF 484

Query: 484  TPLLGVTILP-KTMKSHHEKKGRFASGFSWLLGRALRWRWVTIVATVALFALSIGGMSLV 542
             P+LGV IL    +K+H  + GR    F   L   +R RW+TI+ TV LFAL+I  M  V
Sbjct: 485  APVLGVHILKGDKLKAHEAEPGRVGRAFEGGLLWCMRNRWLTIIGTVVLFALAIFCMRFV 544

Query: 543  QQQFFPSSDRVELIVDWNLPQNSSIAETNRQMAQFEQEMLAKNTDIDHWTTYVGEGAPRF 602
            Q QFFPSSDR E++VD NLPQN+SI ET + + +FE   +  + D+ HW+TY+G+GA RF
Sbjct: 545  QNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEAR-IKDDPDLVHWSTYIGQGAIRF 603

Query: 603  ILSFDVQTPDVTFGQTVIVTKGLDVRDKVRAELQDYLDRTFIGTDAFVKLLDIGPPVGKP 662
             L  D Q  +  + Q VIV+KG + R  +   LQ  L   F+G    V+ L++GPPVG+P
Sbjct: 604  YLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVGTNVQSLEMGPPVGRP 663

Query: 663  VQYRLSGPDIQKVRELGQQLSGIVGEHRLLSNLVMDWNEPTRVVKVDVLQDKARQLGVSS 722
            +QYR+SG DI +VR+   +L+ ++ ++  +  ++ DWNEP +V++V++ QDKARQLG+SS
Sbjct: 664  IQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKARQLGLSS 723

Query: 723  EDIANAMNSIVEGSTVTQVRDDIYLVNVVARAQLAERGSIETLQNLQLPATNGKAVPLSA 782
            ED+AN MNSIV G  +TQV D+IYLV+VVARA+ +ERGS +TLQNLQ+   NG ++PL +
Sbjct: 724  EDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNGTSIPLLS 783

Query: 783  IANFRYELEQPTIWRRDRIPTVTVKAAIIGPTQPATIVEQLKPKLEAFEKMLPVGYKLET 842
             A  RYELEQP +WRRDR PT+T+KA++ G  QP  +V QLKPK++ F   LPVG+++ T
Sbjct: 784  FATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASKLPVGFEVAT 843

Query: 843  GGSVESSADSQAPIVAVVPLMLFAMATILMVQLQSFSRLFLVFAVAPTALIGVVVALLFS 902
            GG+VE SA +Q PI  V+PLMLF MAT LM+QL S  +LFLV +VAP  LIGVV+AL+ +
Sbjct: 844  GGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGVVLALVPT 903

Query: 903  NAPMGFVAILGVLALIGILIRNSVILVVQIEHLRSEGVSAWRAVIEATEHRMRPIMLTAA 962
              PMGFVAILG+LAL GI+IRNSVILV QI+   ++G+S W AV+EAT HR RPI+LTAA
Sbjct: 904  GTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRRPILLTAA 963

Query: 963  AATLALIPISREIFWGPMAYAMMGGIVVGTALTLLFLPALYVAWFRIPREDDK 1015
            AA+L +IPI+RE+FWGPMAYAM+GGI+V T LTLLFLPALYVAW++I RE  K
Sbjct: 964  AASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKI-REPQK 1015