Pairwise Alignments

Query, 1023 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  717 bits (1851), Expect = 0.0
 Identities = 392/1025 (38%), Positives = 602/1025 (58%), Gaps = 8/1025 (0%)

Query: 3    KFNLSDWALEHRSLVWYFMLVFVLAGVFSYLNLGREEDPNFTIKTMVISAQWPGASAEEV 62
            +FNLS  A+  RS+  + +++   AG  ++  LGR EDP FT+K M I   WPGA+A+E+
Sbjct: 5    RFNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEM 64

Query: 63   ARQVTDRIEKKLEELDNLDHLRSQTVAGRTTIFVELVPETKARNVEPTWVRVRNMIGDIK 122
               V + +EK+++EL   D   + T  G     V L  +T    V+  + + R   GD  
Sbjct: 65   QDLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQA 124

Query: 123  GEFPSGVVGPFFNDRFGDVYGNIYAFTSDGLSQRQLRDLVEDARAKVLTVDDIGKVDVIG 182
               P+GV+GP  ND F DV   +YA  + G  QRQL    E  R ++L V  + KV++IG
Sbjct: 125  KLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIG 184

Query: 183  AQDEAIYLEFSTRQIAALGIDQQSIIKTLQSQNAVTQSGFVNAGPERVALRVSGQFTSED 242
             Q E I++ FS  ++A LGI  Q I   L +QNA++ SG V     +V +RV G F    
Sbjct: 185  EQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLA 244

Query: 243  SLRSINLRVNNRFFPLTEVATIRRGYVDPPSSLFRFNGQPAIGLAIGMKTGANLLHFGEA 302
             +R   +    R   L++VA + RGY DP + L R +G+PA+ L I M+ G N L  G+A
Sbjct: 245  KIRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKA 304

Query: 303  LDAQMKRVVADLPVGVDVHRVSDQPAVVDEAVSGFTSALFEAIAIVLVISFISLGLRAGM 362
            L+A+  ++   +P+G+ + +V+DQ   +  +V  F    F A+ +V+++ F+S+G R G+
Sbjct: 305  LEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGV 364

Query: 363  VVAVSIPLVLAITFVYMEYTGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEVGDDL 422
            VVA ++PL LAI FV M  TG +  RI+LG+LI+ALGLLVDDA+IA+EMMV ++E G D 
Sbjct: 365  VVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDR 424

Query: 423  RKAATYVYTSTAFPMLTGTLVTVAGFIPVGLNNSAAGEFTFTLFVVIAVSLIVSWIVAVL 482
             KA+ Y ++ TA PML+GTLVT  GF+P G   S AGE+T  +F ++ ++LI SW+VAV 
Sbjct: 425  IKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVA 484

Query: 483  FTPLLGVTILP--KTMKSHHEK--KGRFASGFSWLLGRALRWRWVTIVATVALFALSIGG 538
            FTP LGV +LP  KT++  H      R  + F  LLG  +  +W+     V+ F  ++ G
Sbjct: 485  FTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLG 544

Query: 539  MSLVQQQFFPSSDRVELIVDWNLPQNSSIAETNRQMAQFEQEMLAKNTDIDHWTTYVGEG 598
            M LV++QFFP+SDR E++V+  +P  +SI +TN    + E   L +  +    TTY+G+G
Sbjct: 545  MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVE-SWLRQQEEAKIVTTYIGQG 603

Query: 599  APRFILSFDVQTPDVTFGQTVIVTKGLDVRDKVRAELQDYLDRTFI-GTDAFVKLLDIGP 657
             PRF L+   + PD +F + V++T+    R+ ++  L++        G    V  L  GP
Sbjct: 604  PPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGP 663

Query: 658  PVGKPVQYRLSGPDIQKVRELGQQLSGIVGEHRLLSNLVMDWNEPTRVVKVDVLQDKARQ 717
                PV YR+ GPD  ++R++  ++  ++    ++  +  DW      +   + QD+ + 
Sbjct: 664  YSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQS 723

Query: 718  LGVSSEDIANAMNSIVEGSTVTQVRDDIYLVNVVARAQLAERGSIETLQNLQLPATNGKA 777
            +G++S  ++  +  ++ G  +T VR+DI  V VV RA    R     ++N  L  +NG+ 
Sbjct: 724  VGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQR 783

Query: 778  VPLSAIANFRYELEQPTIWRRDRIPTVTVKAAIIGPTQPATIVEQLKPKLEAFEKMLPVG 837
            VP+S I +    +E P + RRDR PT+TV+  I    QP  +   +   L+     LP G
Sbjct: 784  VPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAG 843

Query: 838  YKLETGGSVESSADSQAPIVAVVPLMLFAMATILMVQLQSFSRLFLVFAVAPTALIGVVV 897
            YK+E  GS+E SA +   IV ++P+M+     I+++Q++S S + +VF  +P  LIGVV 
Sbjct: 844  YKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVP 903

Query: 898  ALLFSNAPMGFVAILGVLALIGILIRNSVILVVQIEHLRSEGVSAWRAVIEATEHRMRPI 957
             LL    P G  A++G++AL GIL+RN++IL+ QI+H + EG++ + AV+EAT  R RP+
Sbjct: 904  VLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPV 963

Query: 958  MLTAAAATLALIPISREIFWGPMAYAMMGGIVVGTALTLLFLPALYVAWFRIPRED--DK 1015
            +LTA AA LA IP++  +FWG +AY ++GG  VGT +TL+FLPA+Y  WF+I       K
Sbjct: 964  LLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRPNSRIAK 1023

Query: 1016 PEGHD 1020
            PE  D
Sbjct: 1024 PEAAD 1028