Pairwise Alignments

Query, 513 a.a., sigma 54 dependent transcriptional activator from Agrobacterium fabrum C58

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

 Score =  277 bits (708), Expect = 7e-79
 Identities = 180/503 (35%), Positives = 259/503 (51%), Gaps = 42/503 (8%)

Query: 5   VLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVIVLDLMMPEMDGL 64
           V ++DDD   R +L+ A+++ G      ++    +  L +   +  VI+ D+ MP   GL
Sbjct: 7   VWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPD--VIISDIRMPGASGL 64

Query: 65  AFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNALKLDR 124
             L  + E    +PVI+ T    +D+ V + + GAF+++ KP   +   A +  A     
Sbjct: 65  DLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVALVKRA----N 120

Query: 125 KEAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGKEMVAR 184
           + A+ +  +          +I+  +PAM  V     R + S+I V++ GESG GKE+VA 
Sbjct: 121 QHAQEQQNQEAPPALTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAH 180

Query: 185 AIQSGGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLFLD 244
           A+     RA  PFI +N  AIP +L+ES LFGHEKGAFTGA     G+F +ADGGTLFLD
Sbjct: 181 ALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLD 240

Query: 245 EIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDLYY 304
           EIGD+P D Q +LLR +  GE   VG     KV+VR+I+AT++NL   V  G+FREDL++
Sbjct: 241 EIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFH 300

Query: 305 RLNVFPITIPALRRRKEDIPHLARVFAERFSAEQKLPNPVGLDASALALLTAYDWPGNIR 364
           RLNV  I IP +  R+EDIP LAR F  R +A++    P  L +     L    WPGN+R
Sbjct: 301 RLNVIRIHIPRMSDRREDIPTLARHFLSR-AAQELAVEPKLLKSETEEYLKNLPWPGNVR 359

Query: 365 QLENAVFRAVVLSQGSELSDSDFPQIALQLPEFSNGDDGDDIIRSPSGSSLKLAAYSPPP 424
           QLEN      V++ G E+  SD P   L LP+ S                         P
Sbjct: 360 QLENTCRWITVMASGREVHISDLPPELLSLPQDS------------------------AP 395

Query: 425 AAESHAVIEEPSDISTTIYRG-GNLISSTDDSGNIRKLAEIEEELIRFALRFYRGQMSQV 483
                  + + +D    + RG  NL+ S         +   E  +I  AL+   G+    
Sbjct: 396 VTNWEQALRQWAD--QALARGQSNLLDSA--------VPAFERIMIETALKHTAGRRRDA 445

Query: 484 ARKLGIGRSTLYRKLKDYGIDPD 506
           A  LG GR+TL RK+K+ G+  D
Sbjct: 446 AVLLGWGRNTLTRKIKELGMKVD 468