Pairwise Alignments

Query, 513 a.a., sigma 54 dependent transcriptional activator from Agrobacterium fabrum C58

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  280 bits (717), Expect = 6e-80
 Identities = 159/388 (40%), Positives = 231/388 (59%), Gaps = 20/388 (5%)

Query: 1   MTAHVLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVIVLDLMMPE 60
           M   VL+++DD V R+ L + +E  G       +    LE + + +   +++V D+ MP 
Sbjct: 1   MAIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDA--FSLVVSDVNMPG 58

Query: 61  MDGLAFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNAL 120
           MDG   L  +      +PV++ T    ++  V+AMR GA D++VKP  P+ +       L
Sbjct: 59  MDGHQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKAL-------L 111

Query: 121 KLDRKEAKAR-TGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGK 179
            L  + A  R TG  G          V+  PA  +++ELA R A+S   V++ GESG GK
Sbjct: 112 NLVERHAAGRVTGEEGP---------VACEPASRQLLELAARVARSDSTVLISGESGTGK 162

Query: 180 EMVARAIQSGGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGG 239
           E++AR I     RA +PF+ +NC AIP N++E+ LFGHEKGAFTGA     GKF +A+GG
Sbjct: 163 EVLARYIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGG 222

Query: 240 TLFLDEIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFR 299
           TL LDEI ++P+ +Q KLLR +Q+ E+E VG  +   +++R+++ TN++L  EV  GRFR
Sbjct: 223 TLLLDEISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFR 282

Query: 300 EDLYYRLNVFPITIPALRRRKEDIPHLARVFAERFSAEQKLPNPVGLDASALALLTAYDW 359
           EDLYYRL+VFP+    LR R  DI  LA     R  A+ K  + V L  +A A L AY W
Sbjct: 283 EDLYYRLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHAS-VRLSPAARACLQAYAW 341

Query: 360 PGNIRQLENAVFRAVVLSQGSELSDSDF 387
           PGN+R+L+NA+ RA++L QG  +  +DF
Sbjct: 342 PGNVRELDNALQRALILQQGGVIEAADF 369