Pairwise Alignments

Query, 370 a.a., enhanced entry protein from Agrobacterium fabrum C58

Subject, 256 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 59.7 bits (143), Expect = 8e-14
 Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 5/196 (2%)

Query: 110 QALDKALTRAQNGDASAQTLVAEMMSRGLGIARDEKTAAFWYQQAAEGGDPVAMFKFALI 169
           +A    L  A  G   AQ L+ +++  G GI +D   A  W+  AA+GG  +A       
Sbjct: 26  KAAQAILAAAGQGVVEAQLLLGQILLDGRGIQQDATVARRWFGIAAQGGSAMAHNMLGRC 85

Query: 170 LMEGKFVTRDKAKADDFMRRAAEAGNASAQFNWGQILVSENPGAKGLLMALPFYEKSAEQ 229
           L  G     +  +A     RAA++G     +N G +L +        + AL  YEK+A+ 
Sbjct: 86  LEHGWGGEVNLVQAAVHYARAADSGLDWGLYNLGNLLATGRGVPANQVQALMCYEKAAQL 145

Query: 230 GIADAQYAVSQIYWSVKDVPTEKKAKARDWLMRAAKAGYDTAQVDLGVWLVNGFGGERNL 289
           G A +     + Y           A+A  W  R+A+AG       L + LV        L
Sbjct: 146 GHAKSMNLYGR-YLEQGIATAPSPARAVRWYRRSAEAGDFRGMFSLALVLVE----RGQL 200

Query: 290 DEGFRWLYGAAQRGNV 305
            E  +WL  A   GN+
Sbjct: 201 AEAGQWLEQARVAGNM 216



 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 50/174 (28%), Positives = 67/174 (38%), Gaps = 46/174 (26%)

Query: 204 QILVSENPG--AKGLLMALPFYEKSAEQGIADAQYAVSQIYWSVKDVPTEKKAKARDWLM 261
           Q ++ E PG  A+ +L A       A QG+ +AQ  + QI    + +  +    AR W  
Sbjct: 17  QAMLEETPGKAAQAILAA-------AGQGVVEAQLLLGQILLDGRGIQQDATV-ARRWFG 68

Query: 262 RAAKAGYDTAQVDLGVWLVNGFGGERNL-----------DEGFRW-LYG----------- 298
            AA+ G   A   LG  L +G+GGE NL           D G  W LY            
Sbjct: 69  IAAQGGSAMAHNMLGRCLEHGWGGEVNLVQAAVHYARAADSGLDWGLYNLGNLLATGRGV 128

Query: 299 -------------AAQRGNVVAQNKVAHLYVQALGTRPDPVEAAKWYVLSRRAG 339
                        AAQ G+  + N       Q + T P P  A +WY  S  AG
Sbjct: 129 PANQVQALMCYEKAAQLGHAKSMNLYGRYLEQGIATAPSPARAVRWYRRSAEAG 182



 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 109 VQALDKALTRAQNGDASAQTLVAEMMSRGLGIARDEKTAAFWYQQAAEGGDPVAMFKFAL 168
           VQAL      AQ G A +  L    + +G+  A     A  WY+++AE GD   MF  AL
Sbjct: 133 VQALMCYEKAAQLGHAKSMNLYGRYLEQGIATAPSPARAVRWYRRSAEAGDFRGMFSLAL 192

Query: 169 ILMEGKFVTRDKAKADDFMRRAAEAGN 195
           +L+E        A+A  ++ +A  AGN
Sbjct: 193 VLVE----RGQLAEAGQWLEQARVAGN 215



 Score = 40.0 bits (92), Expect = 7e-08
 Identities = 28/90 (31%), Positives = 43/90 (47%)

Query: 251 EKKAKARDWLMRAAKAGYDTAQVDLGVWLVNGFGGERNLDEGFRWLYGAAQRGNVVAQNK 310
           E   KA   ++ AA  G   AQ+ LG  L++G G +++     RW   AAQ G+ +A N 
Sbjct: 22  ETPGKAAQAILAAAGQGVVEAQLLLGQILLDGRGIQQDATVARRWFGIAAQGGSAMAHNM 81

Query: 311 VAHLYVQALGTRPDPVEAAKWYVLSRRAGL 340
           +        G   + V+AA  Y  +  +GL
Sbjct: 82  LGRCLEHGWGGEVNLVQAAVHYARAADSGL 111