Pairwise Alignments

Query, 370 a.a., enhanced entry protein from Agrobacterium fabrum C58

Subject, 272 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 56.6 bits (135), Expect = 8e-13
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 158 GDPVAMFKFALILMEGKFVTRDKAKADDFMRRAAEAGNASAQFNWGQILVSENPGAKGL- 216
           G   A+     I + GK+   D   A   +R AA  GNA+A FN GQ    ++   KG+ 
Sbjct: 77  GSVSALNDLGWIWLNGKYWRADTVLAGHLLRMAALQGNAAAWFNLGQ----QHYFGKGID 132

Query: 217 ---LMALPFYEKSAEQGIADAQYAVSQIYWS-VKDVPTEKKA---KARDWLMRAAKAGYD 269
              + A   Y ++ ++G+  A  A+  +Y   V D   E +    +A  W +R A+ G  
Sbjct: 133 PSYVQAAECYRQAFDRGMLHAAAALGDLYEEEVCDGDLEWQVDLVQAYQWFLRGAEQGEA 192

Query: 270 TAQVDLGVWLVNGFGGERNLDEGFRWLYGAAQRGNVVAQNKVA 312
             + ++G  L++G   E NL     WL  AA  G V A  ++A
Sbjct: 193 RCRFEMGYRLMHGLHVEANLKAALYWLELAAAAGVVQAAEELA 235



 Score = 34.7 bits (78), Expect = 3e-06
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 107 EYVQALDKALTRAQNGDASAQTLVAEMMSRGLGIARDEKTAAFWYQQAAEGGDPVAMFKF 166
           + VQA    L  A+ G+A  +  +   +  GL +  + K A +W + AA  G   A  + 
Sbjct: 175 DLVQAYQWFLRGAEQGEARCRFEMGYRLMHGLHVEANLKAALYWLELAAAAGVVQAAEEL 234

Query: 167 ALILMEGKFVTRDKAKADDFMRRAAEAGNASA 198
           A+      F +RD  +  ++  RA + G+  A
Sbjct: 235 AV-----HFSSRDAVRYQEWRDRAVQMGSTLA 261



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 11/172 (6%)

Query: 101 GHFQRGEYVQALDKALTRAQNGDASAQTLVAEMMSRGLGIARDEKTAAFWYQQAAEGGDP 160
           G + R + V A       A  G+A+A   + +    G GI      AA  Y+QA + G  
Sbjct: 92  GKYWRADTVLAGHLLRMAALQGNAAAWFNLGQQHYFGKGIDPSYVQAAECYRQAFDRGML 151

Query: 161 VAMFKFALI----LMEGKFVTR-DKAKADDFMRRAAEAGNASAQFNWGQILVSENPGAKG 215
            A      +    + +G    + D  +A  +  R AE G A  +F  G  L+        
Sbjct: 152 HAAAALGDLYEEEVCDGDLEWQVDLVQAYQWFLRGAEQGEARCRFEMGYRLMHGLHVEAN 211

Query: 216 LLMALPFYEKSAEQGIADAQYAVSQIYWSVKDVPTEKKAKARDWLMRAAKAG 267
           L  AL + E +A  G+  A   ++ +++S +D       + ++W  RA + G
Sbjct: 212 LKAALYWLELAAAAGVVQAAEELA-VHFSSRDA-----VRYQEWRDRAVQMG 257