Pairwise Alignments

Query, 599 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score =  320 bits (819), Expect = 1e-91
 Identities = 200/583 (34%), Positives = 318/583 (54%), Gaps = 20/583 (3%)

Query: 14  SLKPLLGLFPYLRRYRGLMAAALFALVLSSATTLALPLAVRRIIDHGFQTPDG------- 66
           SLK    L  Y++ Y G+   ++   V+ ++T   L   ++  +D G   P+        
Sbjct: 13  SLKIYFRLLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVD-GLSNPEAVLFPNVP 71

Query: 67  -----GMINSYFAMLLAIAVVLALASAMRYYYVMTIGERVVADLRRDVFAHLTTLSQQFF 121
                 ++ +   +++ IA    L S +  Y++  +   +V DLR  +F  L  L  ++F
Sbjct: 72  YLRDLQLLQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYF 131

Query: 122 DSNRSGELTSRLTADTVQIRSAFGSSASVALRNIIMCCGAVAMMIYTSPGLSGLALLAIP 181
           D++ SG L SR+T +   +  A   +  V +R  +      A +++ +  L+ + +  +P
Sbjct: 132 DNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAILP 191

Query: 182 FIVFPLIAFGRSVRARSRTTQDTLANSAAYASETIAASRTVQSFNAEVLANARYGASVEA 241
            I   +    +  R +S+  Q  + +    ASETI   R V+SF  E     R+G + ++
Sbjct: 192 VIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQS 251

Query: 242 AYQGARAAIGARSVLTAVAIALVFGSVVGILWYGAQNVLAGSMTAGTLGQFVLYSVIAAS 301
                       S+ T +   +++ ++  +++      L G  TAG L  ++  + +   
Sbjct: 252 NTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFLVL--FLRGDSTAGDLVAYITAAGLLPK 309

Query: 302 GLGQLSEVWGELAQAGGAAERLSELLNERSPVAEPAAPVAMPQPPRGEAEFDNVDFVYPL 361
            + QLSEV   + +    AE + E L+E     E        +   G  E  N+ F YP 
Sbjct: 310 PIRQLSEVSSTIQKGLAGAESIFEQLDE---APEVDTGTVEKERVEGRLEVRNLSFTYP- 365

Query: 362 ATGRPIVSGLSLKVAAGETVAIVGPSGAGKSTVFSLLMRFYDPQQGRITIDGVDIRNVSL 421
            T R ++S +S     G+ +A+VG SG+GKST+ +L+ RFY   +G+I +DGV+I +  L
Sbjct: 366 GTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRL 425

Query: 422 ADLRARLSIVPQDVAIFASSIHDNIAFGR-PEATREDVRAAAIAAQADGFIERLGDGYDT 480
            +LR  +S V Q V +F  ++ +NIA+G    A R D+ AAA  A A  F++RL  G+DT
Sbjct: 426 RNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDT 485

Query: 481 QVGERGVTLSGGQRQRIAIARAILRDAPILLLDEATSALDAESETLVQKALDELMKTRTT 540
           +VGE GV LSGGQRQR+AIARA+L++AP+L+LDEATSALD ESE  +Q ALD +M+ RTT
Sbjct: 486 EVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTT 545

Query: 541 IVIAHRLATVLKADRILVMDEGRIIEEGTHQSLIRQNGLYARL 583
           +VIAHRL+T+ KAD+ILVMD+GR++E GTH  L+  NG YARL
Sbjct: 546 LVIAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARL 588