Pairwise Alignments

Query, 323 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 311 a.a., transmembrane sensor from Agrobacterium fabrum C58

 Score =  107 bits (267), Expect = 4e-28
 Identities = 86/309 (27%), Positives = 133/309 (43%), Gaps = 15/309 (4%)

Query: 19  REAADWVFRNRDPDQPETELAEFRRWMELDPENCRAYTAAKRILGEARTAIRSDAGLREA 78
           REA  W+ R         +     RW      + +A+  + R+     +A+      R+ 
Sbjct: 11  REATAWIVRITSGTATTEDAEALLRWRSRSDAHEQAFQQSARLWKNLGSALGET---RKT 67

Query: 79  PVSSSSRGRNAIISSVVAIAAAGTLFIA-----LDGPMRMSADIMSDTDEMPEVTLEDGS 133
             S+ +R R+ I +  VA  AAG   +      L     M AD  +   E   V L DGS
Sbjct: 68  SASTVTR-RSFIAAGSVAAGAAGVGVVLSELGFLPSVDAMLADYATGVGEQRTVELVDGS 126

Query: 134 RVQLNASSAIALDFTSERRTVRLLRGQAFFQVSPDAKRPFSVSADDTLVTALGTAFDVRQ 193
              L+  + ++LD++   R + L  G A F V  DA RPF V+A +   TA GT+F V+ 
Sbjct: 127 TAILDGGTTLSLDYSPSSRHLVLTSGAAVFDVVHDAARPFVVTAANGDTTATGTSFSVKH 186

Query: 194 SATDTRIAVTEHSVRVDFKEPGALPVKVGEGEEVLHLNETGKSTIRKTDANTALAWRRGQ 253
              D  I   E  + V       L      G E +  +  G       D  TA AWRRG 
Sbjct: 187 GEEDVSIECLEGHITVQCLGDSQL-----NGGEGISYSRAGLGKKVAADIETAAAWRRGL 241

Query: 254 LTVDNMPLSYVIEEIQRHFHGRIVIGNEATARRVVSGTLFVTDTESALNFLRTALNIQTY 313
           L  ++ PL+ V+ ++ RH  GR+VI +     R +SG   +   +  L  L   L ++  
Sbjct: 242 LIFEDRPLADVVSDLNRHRRGRVVIASSDLRSRRMSGVFHLNRPDEILAHLEETLQVRPV 301

Query: 314 K-IGPIIVV 321
             +G I+++
Sbjct: 302 SLVGGIVLL 310