Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 72.0 bits (175), Expect = 5e-18
 Identities = 42/156 (26%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 17  LNRAIVEHYGDIIKAVGGRSRSDGAAREIVHDLYVKLALQPDALSGKRSIKAFLCRAASN 76
           L +A V++   ++K     +     A ++V D + +L+  P   S  ++  ++L +   N
Sbjct: 14  LLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRN 73

Query: 77  MRIDRIRREQLESRLFSGSDEDARAVFAADNAPDQGLAVEARLTVLKQAIADLPEKRRTA 136
           + ID  R++ +E + +SGS+E+   V   + +P+      A L  + +A+ +LP + R A
Sbjct: 74  LAIDHYRKQAMELK-YSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYA 132

Query: 137 FVLHRLHHLSPDQIASKLKISRNMVDRHLRRALSHC 172
           F ++RL+ +    IA +L +S  +V+  +R AL HC
Sbjct: 133 FEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHC 168