Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 75.9 bits (185), Expect = 3e-19
 Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 5/158 (3%)

Query: 24  HYGDIIKAVGGRSRSDGAAREIVHDLYVKLALQPDALSGKRSIKAFLCRAASNMRIDRIR 83
           +Y +++  +  R  S  AA ++ HD Y+++ L+          +AFL R A N+ +DR R
Sbjct: 4   YYRELVSFLSARLGSRQAAEDVAHDAYLRV-LERTGSEQIEHPRAFLYRTALNLVVDRHR 62

Query: 84  REQL-ESRLFSGSDEDARAVFAADNAPDQGLAVEARLTVLKQAIADLPEKRRTAFVLHRL 142
           R+ + ++      D D+R      +     L ++ RL ++++A+ +L    R +F+L ++
Sbjct: 63  RQLVRQAEPLDALDADSRL---HSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKI 119

Query: 143 HHLSPDQIASKLKISRNMVDRHLRRALSHCLDRLFEME 180
             LS  QIA +L ISR++V++H+  A+ HC  R+ + E
Sbjct: 120 EGLSHQQIAERLGISRSLVEKHIVNAMKHCRVRMRQWE 157