Pairwise Alignments

Query, 346 a.a., xylose ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 330 a.a., D-xylose-binding periplasmic protein from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  244 bits (622), Expect = 3e-69
 Identities = 140/326 (42%), Positives = 200/326 (61%), Gaps = 7/326 (2%)

Query: 7   LLAGTAVLVSLHTAAIAADLVVGVSWSNFQEERWKTDEAAIKAALDKAGAKYISADAQSS 66
           LL     L+  + AA A ++ +G++  + + ERW+ D        +  GAK     A  +
Sbjct: 7   LLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN 66

Query: 67  AAKQLTDVESLISQGANALIILAQDSDAIGPAVEKAVAEGIPVVGYDRLIENKNA-FYIT 125
              Q++ +E++I++G + L+I+  +   +   V++A  EGI V+ YDR+I + +  FYI+
Sbjct: 67  EETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYIS 126

Query: 126 FDNKEVGRLQAAEVFKVKPEGNYVFIKGSSSDPNADFLFAGQQEVLKAAMSSGKIKNVGE 185
           FDN++VG LQA  +  + P+GNY  + GS  D NA    AGQ +VLK  + SGKIK VG+
Sbjct: 127 FDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGD 186

Query: 186 AYTDGWKPENAQKNMEQFLTKNNNKVDAVVASNDGTAGGAIAALAAQGMAGSVPVSGQDA 245
            + DGW PENA K ME  LT NNNK+DAVVASND TAGGAI AL+AQG++G V +SGQDA
Sbjct: 187 QWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDA 246

Query: 246 DFAALNRVALGTQTVSVWKDSRELGKEAAGIALALAGGKKMTEIKGVTAFDGGPKKVTMQ 305
           D A + R+A GTQT++V+K    L   AA IA+ L  G+   E K  T+ + G K V   
Sbjct: 247 DLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQ---EPKADTSLNNGLKDV--P 301

Query: 306 SVFLKPIAITKDNL-GTVIDAGWIKK 330
           S  L PI + K+N+  TVI  G+ K+
Sbjct: 302 SRLLTPIDVNKNNIKDTVIKDGFHKE 327