Pairwise Alignments

Query, 346 a.a., xylose ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 354 a.a., sugar binding protein from Agrobacterium fabrum C58

 Score =  151 bits (381), Expect = 3e-41
 Identities = 114/354 (32%), Positives = 173/354 (48%), Gaps = 26/354 (7%)

Query: 1   MNSFAKLLAGTAV-LVSLHTAAIAADL-VVGVSWSNFQEERWKTDEAAIKAALDKAGAKY 58
           M S   L+A  A+   S    A A D   VG++       RW  D   I   L +AG K 
Sbjct: 1   MKSIISLMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKT 60

Query: 59  ISADAQSSAAKQLTDVESLISQGANALIILAQDSDAIGPAVEKAVAEGIPVVGYDRLIEN 118
               A      QL+ +E+++++G   L+I + D   +   +++A  +GI V+ YDRLI N
Sbjct: 61  DLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRN 120

Query: 119 KN--AFYITFDNKEVGRLQAAEVFKV------KPEGNYVFIKGSSSDPNADFLFAGQQEV 170
               ++Y TFDN +VG LQA  +         K   N     GS  D NA F + G   V
Sbjct: 121 SGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSV 180

Query: 171 LKAAMSSGKI------KNVGEAYTDGWKPENAQKNMEQFLTK--NNNKVDAVVASNDGTA 222
           LK  + SGK+        + +  T  W P  AQ  M+  L+    + KVDAV++  DG +
Sbjct: 181 LKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLS 240

Query: 223 GGAIAALAAQGMAGS---VP-VSGQDADFAALNRVALGTQTVSVWKDSRELGKEAAGIAL 278
            G I++L   G       +P VSGQDA+  ++  +  G Q  +++KD+REL K    +  
Sbjct: 241 IGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMVN 300

Query: 279 ALAGGKKMTEIKGVTAFDGGPKKVTMQSVFLKPIAITKDNLGTV-IDAGWIKKE 331
           A+  GK+  E+     ++ G K V   S  LKP+A+TK+N   V +D G+ K++
Sbjct: 301 AVMEGKE-PEVNDTKTYENGVKVV--PSYLLKPVAVTKENYKQVLVDGGYYKED 351