Pairwise Alignments

Query, 513 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 495 a.a., xylitol ABC transporter, ATPase component (from data) from Pseudomonas simiae WCS417

 Score =  319 bits (817), Expect = 2e-91
 Identities = 181/473 (38%), Positives = 289/473 (61%), Gaps = 3/473 (0%)

Query: 1   MDKQPVFQARNVEKVFPGVRALKGVNLSLQPGSIHALLGENGAGKSTLIKVVTGVHHQSS 60
           M +  + QA +V K + GV AL+   LSL+ GS+HAL G NGAGKST + ++ G+  + +
Sbjct: 1   MARPLLLQAEHVAKAYAGVPALRDGRLSLRAGSVHALCGGNGAGKSTFLSILMGITQRDA 60

Query: 61  GQILVDGQAVRFSNPREAIARGIGVVHQERNLIPRFSIAENIHMEKLGAHYLKPIDYAAL 120
           G IL++G  V+F+ P EA+A GI ++ QE   IP  ++AENI + +        +D  AL
Sbjct: 61  GSILLNGAPVQFNRPSEALAAGIAMITQELEPIPYMTVAENIWLGREPRRAGCIVDNKAL 120

Query: 121 NRDARRWLEALNLEIDPATPVSELSVAQMQLVEIAKALSLQSRVLLLDEPTTSLTPSETD 180
           NR  R  L++L  ++D  +P+  LSVAQ+QLVEIAKA S   +V+++DEPT+++   E  
Sbjct: 121 NRRTRELLDSLEFDVDATSPMHRLSVAQIQLVEIAKAFSHDCQVMIMDEPTSAIGEHEAQ 180

Query: 181 NLFRILRRLRDDGASLVFVSHKLEEVLDICDRVTVLRDGENACESRSMEGLGRQDLVRLM 240
            LF+ +RRL   GA +V+VSH+L E+  I D  ++ RDG    ES  M  + R  LVR +
Sbjct: 181 TLFKAIRRLTAQGAGIVYVSHRLSELAQIADDYSIFRDGA-FVESGRMADIDRDHLVRGI 239

Query: 241 IGRAESGGGWRKRAVEHNPMVLELEGVSTAIGHGDVSLSVRKGEIVGLYGLVGAGRTELA 300
           +G+  +    +          L+++ +S A    D+SL +R+GEI+G+YGL+G+GR+E  
Sbjct: 240 VGQELTRIDHKVGRECAANTCLQVDNLSRAGEFHDISLQLRQGEILGIYGLMGSGRSEFL 299

Query: 301 KSIMGKFAVTSGNVRVSGRPARIRSVAEAIHDYGVGYVSEDRKGDGLILQHSVLANAGVP 360
             I G     SG+V + G+P  I  + +A  + G+  V+EDRK  GL+L  S+L+N  + 
Sbjct: 300 NCIYGLTVADSGSVTLQGKPMPI-GLPKATINAGMSLVTEDRKDSGLVLTGSILSNIALS 358

Query: 361 IWRKLSNTFGVLSDGRIRAAVTPFLKKLEVKTPSLSQTVGNLSGGNQQKISVAKWLAADV 420
            +++LS ++ +++  +        +K+L++KT SL   V ++SGGNQQK+ +AK L+ + 
Sbjct: 359 AYKRLS-SWSLINARKETQLAEDMVKRLQIKTTSLELPVASMSGGNQQKVVLAKCLSTEP 417

Query: 421 KLLIVDEPSVGIDIKTKAYLHDLLRELADNGTAILVITSDMPEMVALADRIVV 473
             L+ DEP+ GID   K  ++ LL +    G A +V++S+ PE++ L+DRI V
Sbjct: 418 VCLLCDEPTRGIDEGAKQEIYHLLDQFVRGGGAAIVVSSEAPELLHLSDRIAV 470



 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 14/224 (6%)

Query: 25  VNLSLQPGSIHALLGENGAGKSTLIKVVTGVHHQSSGQILVDGQAVRFSNPREAIARGIG 84
           ++L L+ G I  + G  G+G+S  +  + G+    SG + + G+ +    P+  I  G+ 
Sbjct: 275 ISLQLRQGEILGIYGLMGSGRSEFLNCIYGLTVADSGSVTLQGKPMPIGLPKATINAGMS 334

Query: 85  VVHQERN---LIPRFSIAENIHMEKLGAHYLKPIDYAALN-RDARRWLEALNLEIDPATP 140
           +V ++R    L+   SI  NI +      Y +   ++ +N R   +  E +   +   T 
Sbjct: 335 LVTEDRKDSGLVLTGSILSNIALSA----YKRLSSWSLINARKETQLAEDMVKRLQIKTT 390

Query: 141 VSELSVAQM-----QLVEIAKALSLQSRVLLLDEPTTSLTPSETDNLFRILRRLRDDGAS 195
             EL VA M     Q V +AK LS +   LL DEPT  +       ++ +L +    G +
Sbjct: 391 SLELPVASMSGGNQQKVVLAKCLSTEPVCLLCDEPTRGIDEGAKQEIYHLLDQFVRGGGA 450

Query: 196 LVFVSHKLEEVLDICDRVTVLRDGENACESRSMEGLGRQDLVRL 239
            + VS +  E+L + DR+ V + G     S     L ++ L+RL
Sbjct: 451 AIVVSSEAPELLHLSDRIAVFKGGRLVTISTD-TALSQEALLRL 493