Pairwise Alignments

Query, 513 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 512 a.a., ribose ABC transporter - ATP-binding subunit from Pseudomonas putida KT2440

 Score =  335 bits (858), Expect = 3e-96
 Identities = 191/474 (40%), Positives = 282/474 (59%), Gaps = 12/474 (2%)

Query: 5   PVFQARNVEKVFPGVRALKGVNLSLQPGSIHALLGENGAGKSTLIKVVTGVHHQSSGQIL 64
           PV + R + K F   RAL G +L +  GS+H L+GENGAGKSTLIKV+ G+H   +G +L
Sbjct: 4   PVLELRGIVKTFGATRALDGASLRVAAGSVHGLVGENGAGKSTLIKVLAGIHRPDAGSLL 63

Query: 65  VDGQAVRFSNPREAIARGIGVVHQERNLIPRFSIAENI---HMEKLGAHYLKPIDYAALN 121
           +DGQ     +PR+    GIG +HQER L  RF++ E +   H  + G      +D  +  
Sbjct: 64  LDGQPHGHFSPRQVERLGIGFIHQERLLPARFTVGEALFFGHERRFG----PLLDRRSQQ 119

Query: 122 RDARRWL-EALNLEIDPATPVSELSVAQMQLVEIAKALSLQSRVLLLDEPTTSLTPSETD 180
           R+A R L +   L +     + ELS A+ Q+V+I +AL ++ RVL+ DEP+ +L   E +
Sbjct: 120 REAARLLDDYFGLRLPANALIGELSSAEQQMVQIVRALLIKPRVLVFDEPSVALVQREVE 179

Query: 181 NLFRILRRLRDDGASLVFVSHKLEEVLDICDRVTVLRDGENACESRSMEGLGRQDLVRLM 240
            L RI++RLRDDG ++V++SH L+E+  +CDRVTVLR+G +  E  S      + + RLM
Sbjct: 180 RLLRIVQRLRDDGLAIVYISHYLQEIEALCDRVTVLRNGRDVAEV-SPRNTSLEQITRLM 238

Query: 241 IGRAESGGGWRKRAVEHNPMVLELEGVSTAIGHGDVSLSVRKGEIVGLYGLVGAGRTELA 300
           + R E G  + K AV    ++L++ G+  A  +  + L VR+GEIVGL GLVG+G  EL 
Sbjct: 239 VNR-EVGELYPKVAVPAGALLLDVRGLGRARAYQGIDLQVRRGEIVGLTGLVGSGAKELL 297

Query: 301 KSIMGKFAVTSGNVRVSGRPARIRSVAEAIHDYGVGYVSEDRKGDGLILQHSVLANAGVP 360
           +S+ G     SG VR+ G+P  +RS  EA+   GV  + E+R+  G+ L  SV  N  + 
Sbjct: 298 RSLFGLAPPDSGEVRLDGQPLSLRSPREAVAQ-GVALMPEERRRQGVALDLSVQENTTLA 356

Query: 361 IWRKLSNTFGVLSDGRIRAAVTPFLKKLEVKTPSLSQTVGNLSGGNQQKISVAKWLAADV 420
              +     G+LS  R R      +++L +K       V  LSGGNQQK+++AKW A   
Sbjct: 357 ALSRFVR-LGLLSPARERHTTLELIERLRIKAHGAHAKVRQLSGGNQQKVALAKWFARCS 415

Query: 421 KLLIVDEPSVGIDIKTKAYLHDLLRELADNGTAILVITSDMPEMVALADRIVVM 474
            L ++DEPSVGID+  K  ++ L+ EL   G  +L+++SD+PE++ L DRI VM
Sbjct: 416 SLYLLDEPSVGIDVGAKVEIYRLIGELVKEGAGVLILSSDLPELIGLCDRIHVM 469



 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 20  RALKGVNLSLQPGSIHALLGENGAGKSTLIKVVTGVHHQSSGQILVDGQAVRFSNPREAI 79
           RA +G++L ++ G I  L G  G+G   L++ + G+    SG++ +DGQ +   +PREA+
Sbjct: 268 RAYQGIDLQVRRGEIVGLTGLVGSGAKELLRSLFGLAPPDSGEVRLDGQPLSLRSPREAV 327

Query: 80  ARGIGVVHQERN---LIPRFSIAENIHMEKLGAHY-LKPIDYAALNRDARRWLEALNLEI 135
           A+G+ ++ +ER    +    S+ EN  +  L     L  +  A         +E L ++ 
Sbjct: 328 AQGVALMPEERRRQGVALDLSVQENTTLAALSRFVRLGLLSPARERHTTLELIERLRIKA 387

Query: 136 DPA-TPVSELSVAQMQLVEIAKALSLQSRVLLLDEPTTSLTPSETDNLFRILRRLRDDGA 194
             A   V +LS    Q V +AK  +  S + LLDEP+  +       ++R++  L  +GA
Sbjct: 388 HGAHAKVRQLSGGNQQKVALAKWFARCSSLYLLDEPSVGIDVGAKVEIYRLIGELVKEGA 447

Query: 195 SLVFVSHKLEEVLDICDRVTVLRDG 219
            ++ +S  L E++ +CDR+ V+  G
Sbjct: 448 GVLILSSDLPELIGLCDRIHVMHRG 472